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CaUC09G173330 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC09G173330
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCiama_Chr09:31016237..31016491
RNA-Seq ExpressionCaUC09G173330
SyntenyCaUC09G173330
Gene Ontology termsGO:0050790 - regulation of catalytic activity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005096 - GTPase activator activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61703.1 hypothetical protein VITISV_026977 [Vitis vinifera]9.3e-2666.67Show/hide
Query:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM+++ DNKA+I+IAHNPILHD  KHVEVDKHF+ EK++ G+IC  Y+PT EQ+AD+LTKGLPK QF+KL+ KL M DIFK A
Subjt:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

KAA0061370.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-2674.39Show/hide
Query:  MRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +RIY DNKA+ISI HNP+LHD  KH+EVDKHFI EKI  G IC+PYLPT EQI DVLTKGLPK QF++LIDKL M DIFK A
Subjt:  MRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

RVW80855.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.5e-2666.67Show/hide
Query:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM+++ DNKA I+I HNP+LHD  KHVEVDKHFI EK++ G+I +PY+PT EQ+AD+LTKGLPK QF+ L+ KL MNDIFKLA
Subjt:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

RVX09086.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.7e-2567.47Show/hide
Query:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        PM++Y+DNKA+IS+ HNP+LHD  KHVEVDKHFI EKID G++C+ Y+PT EQ+ADV TKGL K QFN L+ KL M DIFK A
Subjt:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

XP_040996179.1 uncharacterized protein LOC121242374 [Juglans microcarpa x Juglans regia]2.7e-2569.05Show/hide
Query:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM++Y DNKA+ISIAHNP+LHD  KHVEVD+HFI EK+D G+IC+PY+ T EQIADV TKGL K QF+ L+ KLTM DIFK A
Subjt:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

TrEMBL top hitse value%identityAlignment
A0A2N9EE05 Uncharacterized protein2.7e-2670.24Show/hide
Query:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM++Y DNKA+ISIAHNP+LHD  KHVEVDKHFI EK++ G+IC+PY+PT EQIADV TKGL K QF+ L+ KLTM DIFK A
Subjt:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A0A2N9G304 Reverse transcriptase Ty1/copia-type domain-containing protein2.7e-2669.05Show/hide
Query:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM++Y DNKA+ISIAHNP+LHD  KHVEVDKHFI EK++ G+IC+PY+PT EQIAD+ TKGL K QF+ L+ KLTM DIFK A
Subjt:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A0A438H8N5 Retrovirus-related Pol polyprotein from transposon RE12.7e-2666.67Show/hide
Query:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM+++ DNKA I+I HNP+LHD  KHVEVDKHFI EK++ G+I +PY+PT EQ+AD+LTKGLPK QF+ L+ KL MNDIFKLA
Subjt:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A0A5D3CT98 Putative mitochondrial protein5.3e-2774.39Show/hide
Query:  MRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +RIY DNKA+ISI HNP+LHD  KH+EVDKHFI EKI  G IC+PYLPT EQI DVLTKGLPK QF++LIDKL M DIFK A
Subjt:  MRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A5BRK7 Reverse transcriptase domain-containing protein4.5e-2666.67Show/hide
Query:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM+++ DNKA+I+IAHNPILHD  KHVEVDKHF+ EK++ G+IC  Y+PT EQ+AD+LTKGLPK QF+KL+ KL M DIFK A
Subjt:  MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.9e-1447.3Show/hide
Query:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL
        P++IY DN+  ISIA+NP  H   KH+++  HF  E++   VIC+ Y+PT  Q+AD+ TK LP  +F +L DKL
Subjt:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-0432.81Show/hide
Query:  IYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQF
        +Y D++++I ++ N + H   KH++V  H+I E +D   + +  + T E  AD+LTK +P+ +F
Subjt:  IYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-0835.14Show/hide
Query:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL
        P  IY DN  +  +  NP+ H  MKH+ +D HFI  ++  G + + ++ T +Q+AD LTK L +  F     K+
Subjt:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.0e-0835.14Show/hide
Query:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL
        P  IY DN  +  +  NP+ H  MKH+ +D HFI  ++  G + + ++ T +Q+AD LTK L +  F     K+
Subjt:  PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAATCCTTCATGATATTATGAAACATGTTGAAGTTGATAAACATTTCATA
AACGAGAAGATTGATGTAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAG
TTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAATCCTTCATGATATTATGAAACATGTTGAAGTTGATAAACATTTCATA
AACGAGAAGATTGATGTAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAG
TTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA
Protein sequenceShow/hide protein sequence
MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA