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CaUC09G177680 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC09G177680
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionmRNA decay activator protein ZFP36L2-like isoform X2
Genome locationCiama_Chr09:36953273..36955566
RNA-Seq ExpressionCaUC09G177680
SyntenyCaUC09G177680
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022974000.1 mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima]2.2e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
XP_022974010.1 uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima]2.2e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
XP_022974012.1 mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima]2.2e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
XP_023536031.1 uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo]2.2e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
XP_023536047.1 mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita pepo subsp. pepo]2.2e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
TrEMBL top hitse value%identityAlignment
A0A6J1EQM3 uncharacterized protein LOC111436579 isoform X11.4e-0678.12Show/hide
Query:  GGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  GGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
A0A6J1I940 mRNA decay activator protein ZFP36L2-like isoform X21.1e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
A0A6J1ICT5 mRNA decay activator protein ZFP36L2-like isoform X21.1e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
A0A6J1ICU5 uncharacterized protein LOC111472626 isoform X11.1e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
A0A6J1IEX1 uncharacterized protein LOC111472616 isoform X11.1e-0675.76Show/hide
Query:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
        +GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Subjt:  NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATGGTGGAGGTTTGTCGTTGGGCAAACATCAATACAGAACGGGCATTTGCCACAGCTGGGAGGATTCTGGAAACTGTCGCTTTGGCCACAGATGCCAGACAAT
GAACTCAGTTCTAATGCGTTTATGGACAGAGCGAAACAGTAGGTTGGCTGGCAAAATTGATGCACTTATATTGCAATCGGAACTCAGTTATTCGCAAAAACTCCCTTACA
CTAACACCAACCTTCGTCTGAGGAAACATGAATTAGCTCACAGTACCCACACAGTACATACGGAAGATACCAGAAAACGGCCAACAACAACCATTTCAGAAGAAACGTTA
CTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAATGGTGGAGGTTTGTCGTTGGGCAAACATCAATACAGAACGGGCATTTGCCACAGCTGGGAGGATTCTGGAAACTGTCGCTTTGGCCACAGATGCCAGACAAT
GAACTCAGTTCTAATGCGTTTATGGACAGAGCGAAACAGTAGGTTGGCTGGCAAAATTGATGCACTTATATTGCAATCGGAACTCAGTTATTCGCAAAAACTCCCTTACA
CTAACACCAACCTTCGTCTGAGGAAACATGAATTAGCTCACAGTACCCACACAGTACATACGGAAGATACCAGAAAACGGCCAACAACAACCATTTCAGAAGAAACGTTA
CTGTGA
Protein sequenceShow/hide protein sequence
MKNGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQTMNSVLMRLWTERNSRLAGKIDALILQSELSYSQKLPYTNTNLRLRKHELAHSTHTVHTEDTRKRPTTTISEETL
L