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CaUC10G181530 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G181530
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPhotosystem II protein D1
Genome locationCiama_Chr10:2658981..2659719
RNA-Seq ExpressionCaUC10G181530
SyntenyCaUC10G181530
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042170 - plastid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622464.1 Flavonol sulfotransferase-like protein [Capsicum annuum]1.1e-6185.42Show/hide
Query:  LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTS
        L  +LP+QLANQTRAPPR DSSFCSS YGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIP+HNLY CA YSPGVRSQKYSHP PLTS
Subjt:  LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTS

Query:  IPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLY
        IPRASYPFS ++GGGA+  RKT IG RDNQA TDDF HVK TLY
Subjt:  IPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLY

KAF3622520.1 30S ribosomal protein S12, chloroplastic [Capsicum annuum]9.2e-5882.27Show/hide
Query:  LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTS
        L  LLPHQL+NQ +APPR DSSFCSS Y VLAAVSSC SPPKGRIEL++RFIV LLIASLFVDKA+SELSFIPRHNLYPCA YSPGVRSQKYSHP PLTS
Subjt:  LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTS

Query:  IPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKA
        IP+ASYPFS + GGGA+  RKTHIG RDNQARTDDF HVK+
Subjt:  IPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKA

PHT34490.1 hypothetical protein CQW23_26290 [Capsicum baccatum]4.9e-5978.4Show/hide
Query:  LSPIAENSPL-------LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY
        LSP   N PL       L  LLPHQLANQTR PP  DSSFC SAY VLA VSS  SPPKGRIELSMRFIVALLIASLFVDKA+SELSFIPRHNLYPCASY
Subjt:  LSPIAENSPL-------LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY

Query:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR
        SP VRSQKYSHP PLTSIPRASYPFS +  GGA+  RKTHIG RDNQARTDDF HVK  LYR
Subjt:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR

PHU30032.1 Photosystem II protein D1 [Capsicum chinense]9.5e-6377.33Show/hide
Query:  TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSE
        T   PS  +  C   LSP   + PL P        +LP+QLANQTRAPPR DSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSE
Subjt:  TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSE

Query:  LSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK
        LSFIPRHNLYPCASYSPGV SQKYSHP PLTSIPRASYPFS + GGGA+  RKT IG RDNQARTDDF HVK
Subjt:  LSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK

VVA28225.1 PREDICTED: conserved [Prunus dulcis]1.1e-5574.07Show/hide
Query:  LSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY
        LSP   + PL P        LLPHQLANQTRAPPRADSSFCSSAYG LAAVSSCCSPPKGR    +R        +    KA+SELSFIPRHNL PC+SY
Subjt:  LSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY

Query:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR
        SPGVRSQKYSHP+PLTSIPRASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Subjt:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR

TrEMBL top hitse value%identityAlignment
A0A2G2VND6 Uncharacterized protein ycf682.4e-5978.4Show/hide
Query:  LSPIAENSPL-------LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY
        LSP   N PL       L  LLPHQLANQTR PP  DSSFC SAY VLA VSS  SPPKGRIELSMRFIVALLIASLFVDKA+SELSFIPRHNLYPCASY
Subjt:  LSPIAENSPL-------LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY

Query:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR
        SP VRSQKYSHP PLTSIPRASYPFS +  GGA+  RKTHIG RDNQARTDDF HVK  LYR
Subjt:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR

A0A2G3DGB3 Photosystem II protein D14.6e-6377.33Show/hide
Query:  TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSE
        T   PS  +  C   LSP   + PL P        +LP+QLANQTRAPPR DSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSE
Subjt:  TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSE

Query:  LSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK
        LSFIPRHNLYPCASYSPGV SQKYSHP PLTSIPRASYPFS + GGGA+  RKT IG RDNQARTDDF HVK
Subjt:  LSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK

A0A2P5Y1J4 Uncharacterized protein5.1e-5487.2Show/hide
Query:  LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTS
        L  LLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDK  S+LSFIPRHNLYPCA YSPGVRSQKYSHP+PLTS
Subjt:  LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTS

Query:  IPRASYPFSFDHGGGASKNRKTHIG
        IP+ASYPF FDHGGG  K  K  +G
Subjt:  IPRASYPFSFDHGGGASKNRKTHIG

A0A5E4FJV7 PREDICTED: conserved5.5e-5674.07Show/hide
Query:  LSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY
        LSP   + PL P        LLPHQLANQTRAPPRADSSFCSSAYG LAAVSSCCSPPKGR    +R        +    KA+SELSFIPRHNL PC+SY
Subjt:  LSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASY

Query:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR
        SPGVRSQKYSHP+PLTSIPRASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Subjt:  SPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR

A0A6N2K292 Uncharacterized protein3.8e-4959.61Show/hide
Query:  MLIPQIPSLFLLREKKF-------------TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCC
        MLIPQIPSL LL E+               ++ RP     HC   L P   + PL P        LLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCC
Subjt:  MLIPQIPSLFLLREKKF-------------TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCC

Query:  SPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFR
        SPPKGR                F+   +   +      LYPCASYS  VRS+KYSHP+PLTSIPRASYPFSFDH GGGAS+NRKTHIGFRDNQARTDDF 
Subjt:  SPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDH-GGGASKNRKTHIGFRDNQARTDDFR

Query:  HVK
        HVK
Subjt:  HVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTATTCCCCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGC
GGAAAATTCCCCACTGCTGCCTCCCCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAG
CAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAA
TTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTC
TTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGA
CACTCTACCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTATTCCCCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGC
GGAAAATTCCCCACTGCTGCCTCCCCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAG
CAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAA
TTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTC
TTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGA
CACTCTACCGCTGA
Protein sequenceShow/hide protein sequence
MLIPQIPSLFLLREKKFTTRRPSTSTRHCSVRLSPIAENSPLLPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSE
LSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR