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CaUC10G191480 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G191480
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationCiama_Chr10:25781114..25791581
RNA-Seq ExpressionCaUC10G191480
SyntenyCaUC10G191480
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]2.2e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]3.8e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]2.2e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]3.8e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.8e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
A0A1S3CQ50 DNA-directed RNA polymerase subunit1.8e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNC FGKAAFIQIQLRSADEPATTFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
A0A6J1DGL3 DNA-directed RNA polymerase subunit2.4e-0787.5Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNC FGKAAFIQ+QLRSADEPATTFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
A0A6J1EXG3 DNA-directed RNA polymerase subunit1.1e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
A0A6J1IB59 DNA-directed RNA polymerase subunit1.1e-0790.62Show/hide
Query:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        TCPNCGFGKAAFIQIQLRSADEPA+TFYK +N
Subjt:  TCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
SwissProt top hitse value%identityAlignment
Q04307 DNA-directed RNA polymerase III subunit RPC103.7e-0556.82Show/hide
Query:  TTCPN---CGFGKAAFIQIQLRSADEPATTFYKRINMFYRNFEN
        T CPN   CG   A F Q+Q+RSADEP TTFYK +N  +R  EN
Subjt:  TTCPN---CGFGKAAFIQIQLRSADEPATTFYKRINMFYRNFEN
Q9CQZ7 DNA-directed RNA polymerase III subunit RPC102.4e-0441.07Show/hide
Query:  LAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        L   +DV   + +W+ +    +   CP C   +A F+Q+Q RSADEP TTFYK  N
Subjt:  LAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC101.4e-0441.07Show/hide
Query:  LAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
        L   +DV   + +W+ +    +  +CP C   +A F+Q+Q RSADEP TTFYK  N
Subjt:  LAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRIN
Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal9.3e-0457.14Show/hide
Query:  CPNCGFGKAAFIQIQLRSADEPATTFYK
        CP CG  KA F  +Q+RSADEP + FY+
Subjt:  CPNCGFGKAAFIQIQLRSADEPATTFYK
AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal9.3e-0457.14Show/hide
Query:  CPNCGFGKAAFIQIQLRSADEPATTFYK
        CP CG  KA F  +Q+RSADEP + FY+
Subjt:  CPNCGFGKAAFIQIQLRSADEPATTFYK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGAAATGAGAAAGGGTTGGCTGAGCTAACCTTATTAGTGTTCCCGGGTGCTTCCCATGCATCTTACTTGGCTCGAGAGGAAGATGTGTCCATCAAGTCTGTAAG
CTGGAAATATCTATCTGGGTGGTTGGATCTTACAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAA
CATTTTACAAGAGAATAAACATGTTTTACCGTAATTTTGAAAACGACGAAAGTGATTCTAGCCATTTTGAAATCACTCCAAACATGCCCTTAATGTGGAGCACAGAAGAA
ACTCTGTCTGCATTGAATGAACAAAGTATATCAAATTTAGTAGAGTGGGAGAATGACCACCTCAGCATGCGAGGCACTGCAAAAATATCTTATCTCTATGGTTATCGCGA
AGAACAGAAGTATGAGATAATTGTGAAGCCCGAGAAAGGGATTTTCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGAAATGAGAAAGGGTTGGCTGAGCTAACCTTATTAGTGTTCCCGGGTGCTTCCCATGCATCTTACTTGGCTCGAGAGGAAGATGTGTCCATCAAGTCTGTAAG
CTGGAAATATCTATCTGGGTGGTTGGATCTTACAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAA
CATTTTACAAGAGAATAAACATGTTTTACCGTAATTTTGAAAACGACGAAAGTGATTCTAGCCATTTTGAAATCACTCCAAACATGCCCTTAATGTGGAGCACAGAAGAA
ACTCTGTCTGCATTGAATGAACAAAGTATATCAAATTTAGTAGAGTGGGAGAATGACCACCTCAGCATGCGAGGCACTGCAAAAATATCTTATCTCTATGGTTATCGCGA
AGAACAGAAGTATGAGATAATTGTGAAGCCCGAGAAAGGGATTTTCTTGTAA
Protein sequenceShow/hide protein sequence
MRGNEKGLAELTLLVFPGASHASYLAREEDVSIKSVSWKYLSGWLDLTTCPNCGFGKAAFIQIQLRSADEPATTFYKRINMFYRNFENDESDSSHFEITPNMPLMWSTEE
TLSALNEQSISNLVEWENDHLSMRGTAKISYLYGYREEQKYEIIVKPEKGIFL