; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC10G191490 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G191490
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationCiama_Chr10:25792017..25799911
RNA-Seq ExpressionCaUC10G191490
SyntenyCaUC10G191490
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR029401 - Nudix hydrolase, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]3.0e-3197.18Show/hide
Query:  QMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        +MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  QMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-3170.27Show/hide
Query:  LFFLYHGCRRSNDPRGRISVKQYWINKANGFQLLRKPKLKQMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDD
        L FLY  C   +   G  S+ ++ + K   F      +  +MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDD
Subjt:  LFFLYHGCRRSNDPRGRISVKQYWINKANGFQLLRKPKLKQMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDD

Query:  DMKNAAQTEET
        DMKNAAQTE T
Subjt:  DMKNAAQTEET
XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]3.9e-3198.57Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]3.9e-3198.57Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]3.9e-3198.57Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.9e-3198.57Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
A0A1S3CQ50 DNA-directed RNA polymerase subunit1.9e-3198.57Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
A0A6J1DGL3 DNA-directed RNA polymerase subunit1.0e-2992.86Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
A0A6J1EXG3 DNA-directed RNA polymerase subunit1.9e-3198.57Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
A0A6J1IB59 DNA-directed RNA polymerase subunit1.9e-3198.57Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal1.5e-1757.35Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD+  AA+TE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal1.4e-1861.76Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE
        MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD+  AA+TE
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCGTCACATCACTCACACTCAGCCACCGTCGATTCAGCCGCCTTTACTGTCTACTACTGAACCACTGCGACGTCGACGTGGGAGAAGCCAGGAAGCAGGCTCGGC
CTCTTCTCTGCTAACATCGGCAGAATCCGCGTCGACATCGGAGAAACGCCTTCCTCTCTTTTTTCTCTATCACGGTTGTCGGAGAAGTAACGATCCTCGGGGAAGGATTT
CTGTAAAGCAATATTGGATCAATAAGGCAAATGGGTTTCAACTTTTAAGAAAGCCCAAACTCAAGCAAATGGAGTTTTGCCCGACTTGTGGGAACATGCTGCAATTTGAG
TTGCCTAATATGGGTAAATCTTCCAGATTCTTCTGCCCGACTTGTCCATATGTGTCCTACTTGGAGAACAGGGTAAAAATCAAAAGAAAGCAACATTTGGTAAAAAAGGA
ATTAGAACCCATAATCTCTGATGATGACATGAAAAATGCAGCTCAAACTGAAGAGACTCCAAGTCACCAAAAGTCAACAAGTAGCAAGAAAGAAAGAATCCCACTGTCTG
AAGTCATAATTGAATTGGAATGCCCGCACGGGACACTAGATGCGTGTGCCAACCAGCAAGCGCCGATAGGCGTGGCCCAGATTGGGCAACAGCGCACTCCACGGGCGAGA
GCGCTAGGCGCGCAAGGCCAGGCAGACGCACGGGCGTCACAGGCGCGCGCTAGGCAGCATGCACATGGTGTGCGGGAGACGCAGCCTTGGTGCCATCTTGGCACAAGCGA
TCAAGCACGGACTCAAGATGAGGCAAGCTTGATCTGGGACATGGGGAAGCGTAAGCCATCAAGCTCTTGGCCATATAGCTTGTATGCACGACACGTGTGGGCGCCCCCTG
CCCTTCCATGGCGGGGTGCGCGCGCGCGTGCTAACTTCGCATGCCACCCATGCACGCGCGCATTCTGGCGTCCGCCTGCGCACGGGCCGCCATGCCCTTCGTGCGCCTTC
AGCTTGCGTACGACTGTGCATTCTATGGGGCATGCTGGCTTGTCATGCCGCTTGCGTGCCTGCATGCCCTGTTGGTGTCTTTGGGGCGCGCTTTCCCCTGTCCGGCTAAA
CCCTCTAGTCAAGGTGTTGGCGAGCTCGACTCCCTACCTATTGCCAATTCTGGTGAGTCGTTGCCAAGTCTTGCTATCGCACATGTCCATCGATGACTGGGTCTGCAAGC
CTCTCCCGCGATCTATTGCCAGCCTACCCTCAGTGGCTCCCTTGGCCACGCTCAAACCTTCGTGGGTGTTCACTTCGAGATTGACAAACCTCCCTCGGCTGAGCTCCAAT
GTCCTCAAGAAAGAAAACAAATCAAAACTACTTGGAACGTTGGTCGCTCCTTATTGGTGGTTCATGGGCGTAACATGCATCACTCCGTGGATGCGTTTTCTGTGGAGCAT
GTTGCTTGAGCTCCTCGGCTGCAATGCCGTCAGAAAAGGGGACCCCTTGGGTCCATCTGCGCTCGGATTACCGCATCGGGCCAATCCCTTGGATGGTGTGAGTGTTCGTC
GGCGCCGACTTGATTGGAACACACGCTTATGTCGTCGCCGTCACTATCAACCTGGATCACCTCGATCCCTTGCTCTAAGCCTTGCGCTTGGCCCACCTGTTGCTCTAGAG
CGGATCGAGGTGATCTTGGTTGACAGTGACTACGACGACATGAGCGTGTGTTCCAATCAAGTCAGCGTCGAGAATGCTCACTATCTAGCACCGACCACCATCCAAGGGAT
TGCCCCGATGCGGCATGCCCCGTTGGCGTCTTTGGGGCGCGCCTTCCCCTGTCCAGCTAAACCCTCTAGCCGAGGTGTTGGCGCGCTTGACTCCCTACCTGCTGCCAATC
CAAGTGAGTCGTTGCCGAGCCTTGCTATCGCACATGTCCACCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCGTCACATCACTCACACTCAGCCACCGTCGATTCAGCCGCCTTTACTGTCTACTACTGAACCACTGCGACGTCGACGTGGGAGAAGCCAGGAAGCAGGCTCGGC
CTCTTCTCTGCTAACATCGGCAGAATCCGCGTCGACATCGGAGAAACGCCTTCCTCTCTTTTTTCTCTATCACGGTTGTCGGAGAAGTAACGATCCTCGGGGAAGGATTT
CTGTAAAGCAATATTGGATCAATAAGGCAAATGGGTTTCAACTTTTAAGAAAGCCCAAACTCAAGCAAATGGAGTTTTGCCCGACTTGTGGGAACATGCTGCAATTTGAG
TTGCCTAATATGGGTAAATCTTCCAGATTCTTCTGCCCGACTTGTCCATATGTGTCCTACTTGGAGAACAGGGTAAAAATCAAAAGAAAGCAACATTTGGTAAAAAAGGA
ATTAGAACCCATAATCTCTGATGATGACATGAAAAATGCAGCTCAAACTGAAGAGACTCCAAGTCACCAAAAGTCAACAAGTAGCAAGAAAGAAAGAATCCCACTGTCTG
AAGTCATAATTGAATTGGAATGCCCGCACGGGACACTAGATGCGTGTGCCAACCAGCAAGCGCCGATAGGCGTGGCCCAGATTGGGCAACAGCGCACTCCACGGGCGAGA
GCGCTAGGCGCGCAAGGCCAGGCAGACGCACGGGCGTCACAGGCGCGCGCTAGGCAGCATGCACATGGTGTGCGGGAGACGCAGCCTTGGTGCCATCTTGGCACAAGCGA
TCAAGCACGGACTCAAGATGAGGCAAGCTTGATCTGGGACATGGGGAAGCGTAAGCCATCAAGCTCTTGGCCATATAGCTTGTATGCACGACACGTGTGGGCGCCCCCTG
CCCTTCCATGGCGGGGTGCGCGCGCGCGTGCTAACTTCGCATGCCACCCATGCACGCGCGCATTCTGGCGTCCGCCTGCGCACGGGCCGCCATGCCCTTCGTGCGCCTTC
AGCTTGCGTACGACTGTGCATTCTATGGGGCATGCTGGCTTGTCATGCCGCTTGCGTGCCTGCATGCCCTGTTGGTGTCTTTGGGGCGCGCTTTCCCCTGTCCGGCTAAA
CCCTCTAGTCAAGGTGTTGGCGAGCTCGACTCCCTACCTATTGCCAATTCTGGTGAGTCGTTGCCAAGTCTTGCTATCGCACATGTCCATCGATGACTGGGTCTGCAAGC
CTCTCCCGCGATCTATTGCCAGCCTACCCTCAGTGGCTCCCTTGGCCACGCTCAAACCTTCGTGGGTGTTCACTTCGAGATTGACAAACCTCCCTCGGCTGAGCTCCAAT
GTCCTCAAGAAAGAAAACAAATCAAAACTACTTGGAACGTTGGTCGCTCCTTATTGGTGGTTCATGGGCGTAACATGCATCACTCCGTGGATGCGTTTTCTGTGGAGCAT
GTTGCTTGAGCTCCTCGGCTGCAATGCCGTCAGAAAAGGGGACCCCTTGGGTCCATCTGCGCTCGGATTACCGCATCGGGCCAATCCCTTGGATGGTGTGAGTGTTCGTC
GGCGCCGACTTGATTGGAACACACGCTTATGTCGTCGCCGTCACTATCAACCTGGATCACCTCGATCCCTTGCTCTAAGCCTTGCGCTTGGCCCACCTGTTGCTCTAGAG
CGGATCGAGGTGATCTTGGTTGACAGTGACTACGACGACATGAGCGTGTGTTCCAATCAAGTCAGCGTCGAGAATGCTCACTATCTAGCACCGACCACCATCCAAGGGAT
TGCCCCGATGCGGCATGCCCCGTTGGCGTCTTTGGGGCGCGCCTTCCCCTGTCCAGCTAAACCCTCTAGCCGAGGTGTTGGCGCGCTTGACTCCCTACCTGCTGCCAATC
CAAGTGAGTCGTTGCCGAGCCTTGCTATCGCACATGTCCACCGATGA
Protein sequenceShow/hide protein sequence
MSRHITHTQPPSIQPPLLSTTEPLRRRRGRSQEAGSASSLLTSAESASTSEKRLPLFFLYHGCRRSNDPRGRISVKQYWINKANGFQLLRKPKLKQMEFCPTCGNMLQFE
LPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEETPSHQKSTSSKKERIPLSEVIIELECPHGTLDACANQQAPIGVAQIGQQRTPRAR
ALGAQGQADARASQARARQHAHGVRETQPWCHLGTSDQARTQDEASLIWDMGKRKPSSSWPYSLYARHVWAPPALPWRGARARANFACHPCTRAFWRPPAHGPPCPSCAF
SLRTTVHSMGHAGLSCRLRACMPCWCLWGALSPVRLNPLVKVLASSTPYLLPILVSRCQVLLSHMSIDDWVCKPLPRSIASLPSVAPLATLKPSWVFTSRLTNLPRLSSN
VLKKENKSKLLGTLVAPYWWFMGVTCITPWMRFLWSMLLELLGCNAVRKGDPLGPSALGLPHRANPLDGVSVRRRRLDWNTRLCRRRHYQPGSPRSLALSLALGPPVALE
RIEVILVDSDYDDMSVCSNQVSVENAHYLAPTTIQGIAPMRHAPLASLGRAFPCPAKPSSRGVGALDSLPAANPSESLPSLAIAHVHR