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CaUC10G192290 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G192290
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionarabinogalactan peptide 23-like
Genome locationCiama_Chr10:26810802..26818141
RNA-Seq ExpressionCaUC10G192290
SyntenyCaUC10G192290
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018086.1 hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1686.15Show/hide
Query:  GVCCKLLNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        G   + + KIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+GLPAIGS+IGASLLSVAAYYLQ
Subjt:  GVCCKLLNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-1586.44Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        + KI CA+LFAAATVSAVVAHDEA APAPGP+SGA +GLPAIGSLIGASLLSVAAYYLQ
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.3e-1693.22Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        + KIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+GLPAIGS IGASLLSVAAYYLQ
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
XP_022998512.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.4e-1588.14Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        +NKI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGSLIGASLLSVAAYYLQ
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
XP_038905644.1 arabinogalactan protein 23-like [Benincasa hispida]4.9e-1691.53Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        + KIACAVLFAAATVSA VAHDEALAPAPGPSSGAA GLPAIGS+IGASLLSVAAYYLQ
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
TrEMBL top hitse value%identityAlignment
A0A0A0L9U8 Uncharacterized protein1.9e-1384.48Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        + KIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGSL+GASLLS AAYYL
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
A0A5A7U280 Arabinogalactan peptide 238.4e-1484.48Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        + KIACA+LFAAATVSA VA D+ALAPAPGPSSGAA GLPAIGSL+GASLLS AAYYL
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
A0A6J1HQG2 arabinogalactan peptide 23-like3.5e-1279.66Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        + KI CAVLFAAATV+A VA +EA APAPGP+S A  GLPAIGSLIGASLLSVAAYYLQ
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
A0A6J1J6Y9 arabinogalactan peptide 23-like6.2e-1793.22Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        + KIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+GLPAIGS IGASLLSVAAYYLQ
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
A0A6J1K873 arabinogalactan peptide 23-like6.9e-1688.14Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
        +NKI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGSLIGASLLSVAAYYLQ
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 233.2e-1062.07Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        + KIAC VLFAAA+++AV+A +E  APAPGP+S A++ LPA+GSL+GASL+S+ +YYL
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.1e-0861.02Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAASGLPAIGSLIGASLLSVAAYYL
        + KIAC V+FAAA+++AV+A  E  APAPGP +SGA+  +PA+GSL+GASL+S+ AYYL
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAASGLPAIGSLIGASLLSVAAYYL
AT3G57690.1 arabinogalactan protein 232.3e-1162.07Show/hide
Query:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL
        + KIAC VLFAAA+++AV+A +E  APAPGP+S A++ LPA+GSL+GASL+S+ +YYL
Subjt:  LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGTTGGATGCAAAGCTAGAGACAGAACCCCCAAAATCTACCGTCTTCAACCCTACAGCTTCGAAATCTTCCTCCAATCCTTCGTCTCTGTTAACGATGTTGCAGT
TCTTCTTCACCGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCCCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGGGAGTCAAGA
ACTTACACCAATCGGGTGTATCCTCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTATTCTTTGCAGCAGCAGATTTGCTTGAGTGTGATTCTGGTTGCCGATTCG
GTTCTTGCGGGAGTCTGTTGTAAATTGCTGAATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGATGAGGCGTTGGCTCCAGC
ACCTGGACCAAGCAGCGGCGCCGCCAGTGGTCTCCCGGCAATTGGCTCTCTCATCGGCGCCTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGTTGGATGCAAAGCTAGAGACAGAACCCCCAAAATCTACCGTCTTCAACCCTACAGCTTCGAAATCTTCCTCCAATCCTTCGTCTCTGTTAACGATGTTGCAGT
TCTTCTTCACCGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCCCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGGGAGTCAAGA
ACTTACACCAATCGGGTGTATCCTCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTATTCTTTGCAGCAGCAGATTTGCTTGAGTGTGATTCTGGTTGCCGATTCG
GTTCTTGCGGGAGTCTGTTGTAAATTGCTGAATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGATGAGGCGTTGGCTCCAGC
ACCTGGACCAAGCAGCGGCGCCGCCAGTGGTCTCCCGGCAATTGGCTCTCTCATCGGCGCCTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAATGA
Protein sequenceShow/hide protein sequence
MLVGCKARDRTPKIYRLQPYSFEIFLQSFVSVNDVAVLLHRGFLCSTFDSLHSPAPELQSLRRDHGGDTSGVKNLHQSGVSSSSACLVKGFGLYSLQQQICLSVILVADS
VLAGVCCKLLNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASGLPAIGSLIGASLLSVAAYYLQ