; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC10G192640 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G192640
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationCiama_Chr10:27264284..27269781
RNA-Seq ExpressionCaUC10G192640
SyntenyCaUC10G192640
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]2.1e-5263.13Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSE KP  KQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT   RP   A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]8.7e-5162.56Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
           R W          +   K   Q       CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKVKCLFDCS FEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]1.0e-3854.08Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSE  P PK+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
                    AT   RP   A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK LFDC+QFEFDW+LDP
Subjt:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

XP_022982643.1 structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima]2.0e-3954.31Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSE  P  K+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT   RP   A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK LFDC+QFEFDW+LDPF
Subjt:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]7.9e-5264.1Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QKP  SN QLSKSSSSS KD  L+VKSE  P PKQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K       +L 
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKK-DDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
          C +  +  +G                    CEFE+KWKEVSRKISYKKK DDMGKQVDDQT+RLLKHRQRALGKVKCLFDCSQFEF+WKLDPF
Subjt:  DMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKK-DDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein1.0e-5263.13Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLSHTFRC KPPISNP LSKSSSSS+KD TL+VKSE KP  KQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT   RP   A  +         CEFE+KWK+VSRKISY KK++D+GK +DDQT+RLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx14.2e-5162.56Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFRCQKPPISNP+L KSSSSS K  TL+VK E +P PKQWCVYLIISSNSPIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
           R W          +   K   Q       CEFE+KWK+VSRKISY KK+DD+GKQ+D+QT+RLLKHRQRALGKVKCLFDCS FEFDWKLDPF
Subjt:  DMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISY-KKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX11.3e-3653.54Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKD---LTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQ
        MRLLSHTFRC K PISNP+   SSSSS KD    TL  +S+LKP P  WCVYLIISSNSP KTYVGVTL+  RR       NG+   I  G K       
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKD---LTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQ

Query:  FLKDMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYK-KKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
              R W         ++   K   Q       CEFE+KWKEVSRKI++K KKDD  +Q D+Q +RLLK+RQRAL KVK +FDCS+FEFD +LDPF
Subjt:  FLKDMCRVWKYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYK-KKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx14.8e-3954.08Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL+VKSE  P PK+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
                    AT   RP   A ++         CEFE+KWKE+ RK+ + +K+    +VDD T+RLLK RQRALGKVK LFDC+QFEFDW+LDP
Subjt:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X19.7e-4054.31Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK
        MRLLS TFR QK PIS+P++SKSSSSS K  TL +KSE  P  K+WCVYLIISSN PIKTYVGVTLD DRR       NG+   I  G K          
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLK

Query:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
                    AT   RP   A ++         CEFE+KWKE+ RK+S+ +K+    +VDDQT+RLLK RQRALGKVK LFDC+QFEFDW+LDPF
Subjt:  DMCRVWKYLVEGATLVVRP---AKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G43210.1 Excinuclease ABC, C subunit, N-terminal3.0e-1734.17Show/hide
Query:  RLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELK-------PNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLE
        RLLS TF   K   SNP+  +  +  N    + + S          P  K W VYLI+S+  PIKTYVG+T D  RR       NG+   I  G K    
Subjt:  RLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELK-------PNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLE

Query:  EPQFLKDMCRVW--KYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKL
                 R W    ++ G T + + +              FE+KWK  +RK+  +KKD+   Q D     LL+HR+RAL KV+   DCS  E DWK+
Subjt:  EPQFLKDMCRVW--KYLVEGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATC
AGAGCTGAAGCCGAACCCGAAGCAATGGTGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTG
CTAAGTTAGATGGCAATGGTCAGATGTATTTCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTT
GAAGGCGCTACTCTAGTCGTTAGACCAGCAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATC
CTATAAGAAGAAGGATGATATGGGAAAGCAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAGTGTTTGTTTGATTGCAGTC
AATTTGAGTTTGATTGGAAACTGGATCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
TATTTAGAAAAAAAAAAAATTAACTGTCAACCAAACGGCCAGTTTCGAACCCACGCCAAAGAAGAGGAACGAAAAAAAGAATATGAGACTGCTCTCTCACACATTTCGTT
GCCAAAAACCCCCAATCTCAAATCCACAACTTTCCAAATCTTCTTCTTCCTCAAATAAGGATCTAACACTCGTCGTCAAATCAGAGCTGAAGCCGAACCCGAAGCAATGG
TGTGTGTATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTAGGCGTCACCCTCGACTTGGATCGACGTGATCCTGCTAAGTTAGATGGCAATGGTCAGATGTA
TTTCATATTTTACGGCACTAAAACTGTCCTAGAAGAGCCACAATTCTTGAAGGATATGTGCCGAGTGTGGAAATACTTGGTTGAAGGCGCTACTCTAGTCGTTAGACCAG
CAAAGCAAGTGCCGCAAGACCCTGTGCCAGAATACCCTTGTGAGTTTGAAACGAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAAGAAGGATGATATGGGAAAG
CAAGTAGATGATCAAACAATAAGGTTGCTCAAGCACAGGCAAAGAGCTCTGGGAAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAACTGGATCC
TTTCTGATTCTTTACATGGGTTGGGGTTTTTCTTTTTCTTTTACCATATTTATATATTTATCTTCAATTTTATGAATTAATGATTGTTTATAAGATAAATGTCTAATGTT
TAAAATTGTGTTAAAA
Protein sequenceShow/hide protein sequence
MRLLSHTFRCQKPPISNPQLSKSSSSSNKDLTLVVKSELKPNPKQWCVYLIISSNSPIKTYVGVTLDLDRRDPAKLDGNGQMYFIFYGTKTVLEEPQFLKDMCRVWKYLV
EGATLVVRPAKQVPQDPVPEYPCEFETKWKEVSRKISYKKKDDMGKQVDDQTIRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF