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CaUC10G193580 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G193580
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionCyclin/Brf1-like TBP-binding protein, putative isoform 1
Genome locationCiama_Chr10:28340168..28341102
RNA-Seq ExpressionCaUC10G193580
SyntenyCaUC10G193580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053852.1 hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa]3.0e-2371.29Show/hide
Query:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR
        MG K+   F   LLFLAFSFLLS SS  AVPTTRILKST +    + P+   +  EDVRDLEI D DS ERLFEGRLILENNDYPGTGANNHHDPKSPAR
Subjt:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR

Query:  P
        P
Subjt:  P

KAG6580910.1 hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia]3.6e-1662Show/hide
Query:  MGLKVLLSF-KLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPARP
        MG K+ LS  +LLLLFL FS LLS S AVPTTRI KST     F +P+  D   +DVRDLE N  D    LF GR +LENNDYPGTGANNHHDP +PA+P
Subjt:  MGLKVLLSF-KLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPARP

KAG6596972.1 hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia]6.5e-1861.39Show/hide
Query:  MGLKVLLSFKLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSL----ERLFEGRLILENNDYPGTGANNHHDPKSP
        MG K LL    LLLFLAF+FL+S S+AVPTTR+L+S      F +P+      +D RDLEI+  DSL    ERL EGR++LENNDYPGTGANNHHDPKSP
Subjt:  MGLKVLLSFKLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSL----ERLFEGRLILENNDYPGTGANNHHDPKSP

Query:  A
        A
Subjt:  A

KAG7017658.1 hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1663Show/hide
Query:  MGLKVLLSF-KLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPARP
        MG K+ LS  +LLLLFL FS LLS S AVPTTRI KST     F +P+  D   +DVRDLE N  D    LF GRL+LENNDYPGTGANNHHDP +PA+P
Subjt:  MGLKVLLSF-KLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPARP

KGN59481.1 hypothetical protein Csa_001422 [Cucumis sativus]1.9e-2268.32Show/hide
Query:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR
        MG K+   F   LLFLAFSFLLS +S  AVPTTRILKST     F  P+   +  +DVRD+EI D DS ERLFEGRLILENNDYPGTGANNHHDPKSPA+
Subjt:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR

Query:  P
        P
Subjt:  P

TrEMBL top hitse value%identityAlignment
A0A0A0LHJ0 Uncharacterized protein9.4e-2368.32Show/hide
Query:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR
        MG K+   F   LLFLAFSFLLS +S  AVPTTRILKST     F  P+   +  +DVRD+EI D DS ERLFEGRLILENNDYPGTGANNHHDPKSPA+
Subjt:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR

Query:  P
        P
Subjt:  P

A0A2R6Q481 Protein Rev like2.8e-1154.55Show/hide
Query:  LLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR
        LL+LFL FSF+LS S AVPT+R LKS   D + Q+    D E++   D E+++V+  E   +GR+ LENNDYPGTGANNHHDP +P R
Subjt:  LLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR

A0A5A7UDI6 Uncharacterized protein1.5e-2371.29Show/hide
Query:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR
        MG K+   F   LLFLAFSFLLS SS  AVPTTRILKST +    + P+   +  EDVRDLEI D DS ERLFEGRLILENNDYPGTGANNHHDPKSPAR
Subjt:  MGLKVLLSFKLLLLFLAFSFLLSPSS--AVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR

Query:  P
        P
Subjt:  P

A0A5B6ZB32 Uncharacterized protein (Fragment)1.7e-1151.69Show/hide
Query:  KLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR
        +LL+LFL F F+LS S+AVPT+R LKS  +D     P   D+  + V D+  +     ER  EGR+ +E+NDYPGTGANNHHDPK+P R
Subjt:  KLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR

A0A6P3YVB6 uncharacterized protein LOC1074052462.2e-1148.98Show/hide
Query:  KVLLSFKLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNM--CDVEIEDVRDL-EINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR
        K+LL+  L+LL L FS  L  SSA+PTTR+LKST +D    +  +   +V++ED  +L E+ +    E  +EGR+++EN DYPGTGANNHHDP++P R
Subjt:  KVLLSFKLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNM--CDVEIEDVRDL-EINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCAAAGTTTTGCTCTCCTTCAAGTTGTTGCTTCTCTTTCTGGCTTTCTCCTTTCTCCTTTCTCCTTCTTCTGCTGTTCCCACCACAAGAATCCTCAAATCAAC
TGCCCAAGATTTGGTTTTTCAGGAACCAAACATGTGTGATGTGGAAATTGAAGATGTAAGAGATTTGGAGATAAATGATGTAGATTCACTGGAAAGATTGTTTGAAGGAA
GATTGATTTTGGAGAACAATGATTATCCCGGGACAGGAGCAAACAATCACCATGATCCAAAGTCTCCTGCAAGACCATAA
mRNA sequenceShow/hide mRNA sequence
CTTAGTACCATCTTCTCCTTCCCCCTTTGTGGAGATCTATTGTGTTTGTTTCCCAAGAAAACATGGGTCTCAAAGTTTTGCTCTCCTTCAAGTTGTTGCTTCTCTTTCTG
GCTTTCTCCTTTCTCCTTTCTCCTTCTTCTGCTGTTCCCACCACAAGAATCCTCAAATCAACTGCCCAAGATTTGGTTTTTCAGGAACCAAACATGTGTGATGTGGAAAT
TGAAGATGTAAGAGATTTGGAGATAAATGATGTAGATTCACTGGAAAGATTGTTTGAAGGAAGATTGATTTTGGAGAACAATGATTATCCCGGGACAGGAGCAAACAATC
ACCATGATCCAAAGTCTCCTGCAAGACCATAATTTAGCAAGCCCAGATTACCATTCGATTATTAACGATTTTATTTTTACTTCTTTGTGTTTAAATGTTATATATATATA
TATATATATAT
Protein sequenceShow/hide protein sequence
MGLKVLLSFKLLLLFLAFSFLLSPSSAVPTTRILKSTAQDLVFQEPNMCDVEIEDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPARP