CuGenDBv2

Gene ID	CaUC10G193820
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	Ciama_Chr10:28674082..28676010
RNA-Seq Expression	CaUC10G193820
Synteny	CaUC10G193820
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

1.5e-193

91.48

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TP STLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPPTDANPLSN-
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFA LDVGLPKAVESTEK IEPMIEPP    P +N 
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPPTDANPLSN-

Query:  MAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE
        +AAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Subjt:  MAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

6.5e-197

92.29

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TP STLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPP----TDANP
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFA LDVGLPKAVESTEK IEPMIEPP     DANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPP----TDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMAAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

2.1e-195

90.82

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH I QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTP STLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT SSP T LD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP
        EN+SLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA LDVGLPKAVESTEK IEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETS
        L+N+AAIQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDS + +
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETS

Query:  DSE
          E
Subjt:  DSE

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

1.7e-189

88.81

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTP STLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT S+P T LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP
        ENESLCS +TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY+FA LDVGLPK+VESTEK IEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD
        L+ +A IQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

1.6e-200

93.03

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Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTP STLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP TSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVK KDD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP
        ENESLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFA LD+GLPKAVESTEK IEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMA+IQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNA PGLHKPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

7.2e-194

91.48

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TP STLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPPTDANPLSN-
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFA LDVGLPKAVESTEK IEPMIEPP    P +N 
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPPTDANPLSN-

Query:  MAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE
        +AAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Subjt:  MAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

3.1e-197

92.29

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TP STLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPP----TDANP
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFA LDVGLPKAVESTEK IEPMIEPP     DANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPP----TDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMAAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

3.1e-197

92.29

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TP STLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPP----TDANP
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFA LDVGLPKAVESTEK IEPMIEPP     DANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPP----TDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMAAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

1.0e-195

90.82

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH I QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTP STLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT SSP T LD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP
        EN+SLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA LDVGLPKAVESTEK IEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETS
        L+N+AAIQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDS + +
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETS

Query:  DSE
          E
Subjt:  DSE

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

1.2e-188

88.56

Show/hide

Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQH IVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTP STLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT S+P T LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP
        ENESLCS TTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA LDVGLPK+VESTEK IEPMIE     PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD
        L+ +A IQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

2.7e-04

31.18

Show/hide

Query:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESL-----
        S  +T   +L L N L    ++++  + +L++   +Q    +I  EI  KD  +   A  LKD E  L+       D          D   NE L     
Subjt:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESL-----

Query:  ----CSTTTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFAKLDVGLP
             S    V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A++DV  P
Subjt:  ----CSTTTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFAKLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

2.8e-134

64.45

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Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPPSTLLPLLPPLPRAQALLLQMASLASKL
        MLQH IVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+    S LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPPSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPK
        D+L DDY+DY++P+R K ++D E   NES  S++TTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA LD+GLPK
Subjt:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPK

Query:  AVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEP
         VE+ EK +E +IEPP     + +++AI  LLPPNI VPSGWKPGMP+ELPRDLP+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ 
Subjt:  AVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEP

Query:  IQVRHVQLDILDQDDDSKETSD
        IQVR VQLDIL+ DD S  +SD
Subjt:  IQVRHVQLDILDQDDDSKETSD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

2.0e-135

64.45

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Query:  MLQHHIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPPSTLLPLLPPLPRAQALLLQMASLASKL
        MLQH IVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+    S LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHHIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPPSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPK
        D+L DDY+DY++P+R K ++D E   NES  S++TTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA LD+GLPK
Subjt:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPK

Query:  AVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEP
         VE+ EK +E +IEPP     + +++AI  LLPPNI VPSGWKPGMP+ELPRDLP+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ 
Subjt:  AVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEP

Query:  IQVRHVQLDILDQDDDSKETSD
        IQVR VQLDIL+ DD S  +SD
Subjt:  IQVRHVQLDILDQDDDSKETSD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTCAGCATCACATTGTTCAGTCGCCAGCAAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATC
CCACCACCAAAATCAACCCAATCTCTCTTCTCCCACCCCCCCCTCCACTCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCAT
TAGCTTCCAAGCTCTTTGAAGTCTCCCCCAACCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCACCCTTTACC
TCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCACTCTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCA
AGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCCAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATG
ATTATGCGGATTATCAGCGACCTCGACGTGTTAAAACAAAGGATGATACCGAAAACGAGTCTTTGTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGAT
ATATTGTCATATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGACGAGCA
AATGCGTGCGTCTCAGTTGTATAATTTTGCAAAACTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAGCTATAGAGCCCATGATTGAGCCTCCAACAGATG
CTAATCCTCTCTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTATTGAATTACCTAGAGATTTACCT
ATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGG
ATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGACGATGATAGTAAAGAAACTTCAGATTCTGAAGTCTTGAAGCAGCTGA
TGGGGATTTGTGAATTTTAA

mRNA sequence

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Protein sequence

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MLQHHIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFT
SLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSD
ILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFAKLDVGLPKAVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLP
MPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSEVLKQLMGICEF

CaUC10G193820 (gene) of Watermelon (USVL246-FR2) v1 genome