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CaUC10G193870 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G193870
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSigma factor binding protein 2
Genome locationCiama_Chr10:28791037..28791465
RNA-Seq ExpressionCaUC10G193870
SyntenyCaUC10G193870
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]3.8e-3584.85Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLN
        MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ LL+DSSCDD+F RSSYES EDILR+D+MEN GAISTSL N
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLN

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]7.3e-5584.03Show/hide
Query:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV
        MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ 
Subjt:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV

Query:  LLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        LL+DSSCDD+F+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]1.3e-5182.43Show/hide
Query:  MDRSLVVSEVTAATTTTKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE
        MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEE
Subjt:  MDRSLVVSEVTAATTTTKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE

Query:  DEQVLLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        DEQ LL+DSSCDD+F RSSYES EDILR+D+MEN GAISTSL N PLV
Subjt:  DEQVLLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]1.1e-2656.08Show/hide
Query:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--
        MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+  
Subjt:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--

Query:  --VLLLDSSCDDEFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV
          V       +D+F  S YESFE++L R+ LMEN    S S+ +  LV
Subjt:  --VLLLDSSCDDEFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]1.8e-1646.76Show/hide
Query:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLL
        M+ SLV  +V       +K+  RKRK CD K QPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA    PS    AS E      +K+  + ++D+Q LL
Subjt:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLL

Query:  L--------DSSCDDEFFRSSYESFEDILRKDLMENLGA
        L        DSS  D+F   SYES E I  +D+++ L A
Subjt:  L--------DSSCDDEFFRSSYESFEDILRKDLMENLGA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein6.2e-5282.43Show/hide
Query:  MDRSLVVSEVTAATTTTKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE
        MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEE
Subjt:  MDRSLVVSEVTAATTTTKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE

Query:  DEQVLLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        DEQ LL+DSSCDD+F RSSYES EDILR+D+MEN GAISTSL N PLV
Subjt:  DEQVLLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A1S3B8H6 uncharacterized protein LOC1034871673.5e-5584.03Show/hide
Query:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV
        MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ 
Subjt:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV

Query:  LLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        LL+DSSCDD+F+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A5D3DPQ4 Sigma factor binding protein 23.5e-5584.03Show/hide
Query:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV
        MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ 
Subjt:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV

Query:  LLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        LL+DSSCDD+F+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like5.3e-2756.08Show/hide
Query:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--
        MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+  
Subjt:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--

Query:  --VLLLDSSCDDEFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV
          V       +D+F  S YESFE++L R+ LMEN    S S+ +  LV
Subjt:  --VLLLDSSCDDEFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV

A0A6J1FKR4 uncharacterized protein LOC1114466394.6e-1545.59Show/hide
Query:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKV--VAEGEEDEQV
        M+ SLV  +V       +K+  R RK CD K QPLKVVYISNPMRV  SA+EFR LVQELTG+DA    PS    AS   +   E  V  + + ++DEQ+
Subjt:  MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKV--VAEGEEDEQV

Query:  LLLDSSCDDE---FFRSSYESFEDILRKDLMENLGA
        LL  ++ +D    F   SYES E I  +D+++ L A
Subjt:  LLLDSSCDDE---FFRSSYESFEDILRKDLMENLGA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic3.4e-0737.39Show/hide
Query:  MDRS---LVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ
        MD+S   L++++  ++++ T+    +KRKS    K P+KV YISNPMRV T  S+FR LVQELTG+DA    PS     + ++    E ++  E  + E 
Subjt:  MDRS---LVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ

Query:  VLLLDSSCDDEFFRS
             S  D+E F +
Subjt:  VLLLDSSCDDEFFRS

Q9LDH1 Sigma factor binding protein 1, chloroplastic6.9e-0848.81Show/hide
Query:  SEVTAATTTT---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN
        S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  SEVTAATTTT---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein2.4e-0837.39Show/hide
Query:  MDRS---LVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ
        MD+S   L++++  ++++ T+    +KRKS    K P+KV YISNPMRV T  S+FR LVQELTG+DA    PS     + ++    E ++  E  + E 
Subjt:  MDRS---LVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ

Query:  VLLLDSSCDDEFFRS
             S  D+E F +
Subjt:  VLLLDSSCDDEFFRS

AT3G56710.1 sigma factor binding protein 14.9e-0948.81Show/hide
Query:  SEVTAATTTT---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN
        S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  SEVTAATTTT---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACCGCGGCAACGACGACGACGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGATGAAAAGAAGCAACCCCTAAAAGT
TGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCT
ATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGAATTTTTT
AGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCTCTGCTCAATTATCCTTTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACCGCGGCAACGACGACGACGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGATGAAAAGAAGCAACCCCTAAAAGT
TGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCT
ATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGAATTTTTT
AGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCTCTGCTCAATTATCCTTTGGTTTAG
Protein sequenceShow/hide protein sequence
MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSCDDEFF
RSSYESFEDILRKDLMENLGAISTSLLNYPLV