CuGenDBv2

Gene ID	CaUC10G194300
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	Ciama_Chr10:29318559..29319183
RNA-Seq Expression	CaUC10G194300
Synteny	CaUC10G194300
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008289 - lipid binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR002379 - V-ATPase proteolipid subunit C-like domain IPR005953 - ATP synthase, F0 complex, subunit C, bacterial/chloroplast IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAB5511204.1 hypothetical protein DKX38_030129 [Salix brachista]

3.6e-30

97.62

Show/hide

Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

KAD4981683.1 hypothetical protein E3N88_18354 [Mikania micrantha]

3.6e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

KJB70982.1 hypothetical protein B456_011G099400 [Gossypium raimondii]

1.6e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAAS IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLE EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

YP_009414754.1 ATP synthase CF0 C subunit [Platycodon grandiflorus]

3.6e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

YP_009572257.1 ATP synthase CF0 subunit III [Debregeasia orientalis]

3.6e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

TrEMBL top hits

e value

%identity

Alignment

A0A0D2RJW8 ATP synthase F0 sector subunit C

7.9e-31

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAAS IAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLE EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

A0A1W5PPK4 ATP synthase subunit c, chloroplastic

1.8e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

A0A5A4MJU0 ATP synthase subunit c, chloroplastic (Fragment)

1.8e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

A0A5N6NMY6 ATP synthase F0 sector subunit C

1.8e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

A0A7T8ZS27 ATP synthase CF0 subunit III

1.8e-30

97.62

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Query:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  ELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

SwissProt top hits

e value

%identity

Alignment

A4QJA2 ATP synthase subunit c, chloroplastic

1.5e-31

97.53

Show/hide

Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

A4QJI6 ATP synthase subunit c, chloroplastic

1.5e-31

97.53

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

Q3V547 ATP synthase subunit c, chloroplastic

1.5e-31

97.53

Show/hide

Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

Q4FGF2 ATP synthase subunit c, chloroplastic

1.5e-31

97.53

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

Q85FN2 ATP synthase subunit c, chloroplastic

1.5e-31

97.53

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

1.4e-32

96.3

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        MNPL+SAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQ E EGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

Sequences

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CDS sequence

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GAACTAAAGATATATCTAATACGCCCTACTACTGTGAATTTAGATAGGGCTTACAATGGAAGTCCTGTTTCGTTTGAACTTATCATGAATCCACTGATTTCTGCCGCTTC
CGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACTCGAGGTGG
AGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

mRNA sequence

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Protein sequence

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ELKIYLIRPTTVNLDRAYNGSPVSFELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQLEVEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

CaUC10G194300 (gene) of Watermelon (USVL246-FR2) v1 genome