; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC10G195600 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC10G195600
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionVQ domain-containing protein
Genome locationCiama_Chr10:30971033..30971359
RNA-Seq ExpressionCaUC10G195600
SyntenyCaUC10G195600
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]3.3e-3983.02Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAV  SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3276.85Show/hide
Query:  RNQ--LQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFV
        RNQ  L+LRGPRPPPLTVNKSSTKIFKKST  N  PIPNRRD   PVI+YLRSPKIIHVRPEEFKSFVQRLTGN SSVAV  +S S T +I +H GE  V
Subjt:  RNQ--LQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFV

Query:  SACNCIPS
        SACN IPS
Subjt:  SACNCIPS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]3.4e-3680.37Show/hide
Query:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVS
        RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAV  SSCS T +I +   EEFVS
Subjt:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVS

Query:  ACNCIPS
         CNCIPS
Subjt:  ACNCIPS

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]3.3e-3983.02Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAV  SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

XP_041027964.1 protein MKS1-like [Juglans microcarpa x Juglans regia]6.2e-1459.77Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNR--SSVAVATSSCSTTELI
        QL GPRP PLTV+KSS KI K      P PIP+R+  RSPVIIYL+SPK+IHVRPEEF   VQRLTGN+  S  A ++ S S+T  +
Subjt:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNR--SSVAVATSSCSTTELI

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein1.6e-3680.37Show/hide
Query:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVS
        RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAV  SSCS T +I +   EEFVS
Subjt:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVS

Query:  ACNCIPS
         CNCIPS
Subjt:  ACNCIPS

A0A1R3JJT0 VQ motif-containing protein4.3e-1358.23Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIP--NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATS
        +L+GPRP PL V+ +S+KI KKS+  + L  P  NR     PV+IYLRSPKIIHVRPEEF S VQRLTG  S+ A  +S
Subjt:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIP--NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATS

A0A1S3B975 protein MKS1-like1.6e-3983.02Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAV  SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

A0A2N9GB07 VQ domain-containing protein2.1e-1561.9Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCS
        +  LQL+GPRP PLTVNKSSTKI K+       P+PN R R SPVIIYL+SPK+IHVRPEEF   VQ+LTGN++   VA  S S
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCS

A0A5D3DP92 Protein MKS1-like1.6e-3983.02Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAV  SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B7.6e-0740Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT
        GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH  P  F + VQRLTG  S+   ++SS S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT

Q8LGD5 Protein MKS13.3e-1048.15Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++H    EF + VQRLTG  S V
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic4.9e-0642.17Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT
        ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F + VQRLTG    +   TS  S++
Subjt:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT

Q9LS54 VQ motif-containing protein 202.4e-0544.44Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K     +P    +    R PVIIY  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding5.4e-0840Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT
        GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH  P  F + VQRLTG  S+   ++SS S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT

AT1G21326.1 VQ motif-containing protein1.4e-0842.22Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT
        GPRP PL V   S KI KK     P P P             R    PVIIY  SP+IIH  P  F + VQRLTG  S+   ++S  S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT

AT1G68450.1 VQ motif-containing protein3.5e-0742.17Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT
        ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F + VQRLTG    +   TS  S++
Subjt:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTT

AT3G18360.1 VQ motif-containing protein1.7e-0644.44Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K     +P    +    R PVIIY  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 12.3e-1148.15Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++H    EF + VQRLTG  S V
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGAT
TCCGAACCGACGCGATCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAA
ACCGATCCTCTGTCGCCGTCGCCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGAT
TCCGAACCGACGCGATCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAA
ACCGATCCTCTGTCGCCGTCGCCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG
Protein sequenceShow/hide protein sequence
MMRNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVATSSCSTTELITNHSGEEFVSACNCIPS