; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G200480 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G200480
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSWI/SNF complex subunit SWI3B
Genome locationCiama_Chr11:204741..204941
RNA-Seq ExpressionCaUC11G200480
SyntenyCaUC11G200480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064672.1 SWI/SNF complex subunit SWI3B [Cucumis melo var. makuwa]1.8e-0861.29Show/hide
Query:  EWDDLKEAKP-----SPVTY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGFPELPFSISF
        E +DL+EA+P     SP  +   GLLL S +P YRFSPRLS PT+ FVIPI  PELPFSISF
Subjt:  EWDDLKEAKP-----SPVTY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGFPELPFSISF
TrEMBL top hitse value%identityAlignment
A0A5D3D8W2 SWI/SNF complex subunit SWI3B8.8e-0961.29Show/hide
Query:  EWDDLKEAKP-----SPVTY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGFPELPFSISF
        E +DL+EA+P     SP  +   GLLL S +P YRFSPRLS PT+ FVIPI  PELPFSISF
Subjt:  EWDDLKEAKP-----SPVTY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGFPELPFSISF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTCTTCGAGTGGGACGACTTGAAGGAAGCAAAGCCCAGCCCAGTTACATATATTGGGCTCCTTCTGGCGTCTGCTGCTCCGTTTTATCGCTTCTCGCCTCGCCT
GAGCTTACCGACGGTTAATTTTGTTATTCCGATCGGGTTCCCGGAGCTTCCTTTCTCTATTTCCTTTTCTCAGCTTCGGACAGCTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTCTTCGAGTGGGACGACTTGAAGGAAGCAAAGCCCAGCCCAGTTACATATATTGGGCTCCTTCTGGCGTCTGCTGCTCCGTTTTATCGCTTCTCGCCTCGCCT
GAGCTTACCGACGGTTAATTTTGTTATTCCGATCGGGTTCCCGGAGCTTCCTTTCTCTATTTCCTTTTCTCAGCTTCGGACAGCTTGTTAG
Protein sequenceShow/hide protein sequence
MEVFEWDDLKEAKPSPVTYIGLLLASAAPFYRFSPRLSLPTVNFVIPIGFPELPFSISFSQLRTAC