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CaUC11G200510 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G200510
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 42
Genome locationCiama_Chr11:216061..218312
RNA-Seq ExpressionCaUC11G200510
SyntenyCaUC11G200510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058146.1 DEAD-box ATP-dependent RNA helicase 42 [Cucumis melo var. makuwa]1.2e-0439.13Show/hide
Query:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIMID----ELCRRKNNGVLKSGGSII
        WLSDG YGAPPFALVFQTS  LL+LI   +G      L+   CC  S +  F    ++L +S N+   P     + +D      CR     V+KSG  + 
Subjt:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIMID----ELCRRKNNGVLKSGGSII

Query:  -WHSRAWSEEIKTKV
         + + AW++EIK  V
Subjt:  -WHSRAWSEEIKTKV
TrEMBL top hitse value%identityAlignment
A0A5A7UVE6 DEAD-box ATP-dependent RNA helicase 425.6e-0539.13Show/hide
Query:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIMID----ELCRRKNNGVLKSGGSII
        WLSDG YGAPPFALVFQTS  LL+LI   +G      L+   CC  S +  F    ++L +S N+   P     + +D      CR     V+KSG  + 
Subjt:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIMID----ELCRRKNNGVLKSGGSII

Query:  -WHSRAWSEEIKTKV
         + + AW++EIK  V
Subjt:  -WHSRAWSEEIKTKV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTACTTGAATCCTTCTGCTGCTGGAATATGCACGTTTCACGTGCTTTTCCTCCATTTCTTTAATTTTGGACTAGATTGGCTATCAGATGGCAAATATGGTGCGCC
ACCCTTTGCGTTAGTGTTCCAGACATCCTTGCTCAATTTGATCAATGCTCCAGCGGGGCAACTCTACACTTGCTATTGTTGCCATGTTTCATCAATTAGAGTCTTTTACC
CTTCTTTTGAGATTTTAGACGTTTCTACCAATTTACTGTGCTTTCCGAGAATCTGTAGCCTGATTATGATAGATGAACTTTGCAGAAGAAAAAATAATGGGGTTTTGAAA
TCTGGGGGAAGTATAATATGGCATAGCAGAGCTTGGAGTGAAGAAATTAAAACGAAGGTGGTGGGGGAGGCTTCTTATGCAGCGAAGCCAGGTGTTTTGAACTTTGGCCC
TTTGTTTTTGATAGTTTTAAAGCTGTGGATACTTCGCTTGGATCATGGAGCTGATAGGGGCGAATCTTTTTCAAAATTCCCAAGCTTGGAAATTGTTCCTTCCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTACTTGAATCCTTCTGCTGCTGGAATATGCACGTTTCACGTGCTTTTCCTCCATTTCTTTAATTTTGGACTAGATTGGCTATCAGATGGCAAATATGGTGCGCC
ACCCTTTGCGTTAGTGTTCCAGACATCCTTGCTCAATTTGATCAATGCTCCAGCGGGGCAACTCTACACTTGCTATTGTTGCCATGTTTCATCAATTAGAGTCTTTTACC
CTTCTTTTGAGATTTTAGACGTTTCTACCAATTTACTGTGCTTTCCGAGAATCTGTAGCCTGATTATGATAGATGAACTTTGCAGAAGAAAAAATAATGGGGTTTTGAAA
TCTGGGGGAAGTATAATATGGCATAGCAGAGCTTGGAGTGAAGAAATTAAAACGAAGGTGGTGGGGGAGGCTTCTTATGCAGCGAAGCCAGGTGTTTTGAACTTTGGCCC
TTTGTTTTTGATAGTTTTAAAGCTGTGGATACTTCGCTTGGATCATGGAGCTGATAGGGGCGAATCTTTTTCAAAATTCCCAAGCTTGGAAATTGTTCCTTCCAATTAA
Protein sequenceShow/hide protein sequence
MVYLNPSAAGICTFHVLFLHFFNFGLDWLSDGKYGAPPFALVFQTSLLNLINAPAGQLYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIMIDELCRRKNNGVLK
SGGSIIWHSRAWSEEIKTKVVGEASYAAKPGVLNFGPLFLIVLKLWILRLDHGADRGESFSKFPSLEIVPSN