; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G201190 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G201190
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
Genome locationCiama_Chr11:755347..763143
RNA-Seq ExpressionCaUC11G201190
SyntenyCaUC11G201190
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0046855 - inositol phosphate dephosphorylation (biological process)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0000243 - commitment complex (cellular component)
GO:0034715 - pICln-Sm protein complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000760 - Inositol monophosphatase-like
IPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR034102 - Small nuclear ribonucleoprotein D1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7152889.1 hypothetical protein RHSIM_Rhsim01G0275400 [Rhododendron simsii]1.6e-3864.83Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGLPTVYGEVS
        LNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA   +S   +V    S
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGLPTVYGEVS

Query:  STDDSGLATFCEPVGKRNSNHSFTAGMAHCVGLR---YQEKIWDH
            SG   +   + +R    +  +    C  LR    +E++W++
Subjt:  STDDSGLATFCEPVGKRNSNHSFTAGMAHCVGLR---YQEKIWDH

MBA0686189.1 hypothetical protein [Gossypium aridum]1.6e-3893.55Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGLP
        LNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPV++DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVP  SG P
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGLP

TXG63624.1 hypothetical protein EZV62_010618 [Acer yangbiense]1.6e-3896.55Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVP
        LNNETVSIELKNGT+VHGTITGVDISMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA P
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVP

XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata]2.7e-38100Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

XP_038896756.1 small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida]2.7e-38100Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

TrEMBL top hitse value%identityAlignment
A0A314YYV1 Small nuclear ribonucleoprotein Sm D11.3e-3892.39Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGL
        LNNETVSIELKNGTVV+GTITGVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVP +  L
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGL

A0A5C7I3G1 Small nuclear ribonucleoprotein Sm D17.6e-3996.55Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVP
        LNNETVSIELKNGT+VHGTITGVDISMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA P
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVP

A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D11.3e-38100Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

A0A6J1K070 Small nuclear ribonucleoprotein Sm D11.3e-38100Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

A0A7J8XHE1 Small nuclear ribonucleoprotein Sm D17.6e-3993.55Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGLP
        LNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPV++DHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVP  SG P
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGLP

SwissProt top hitse value%identityAlignment
P62314 Small nuclear ribonucleoprotein Sm D15.8e-2872.09Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
        L++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  AV
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV

Q3ZC10 Small nuclear ribonucleoprotein Sm D15.8e-2872.09Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
        L++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  AV
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV

Q4R5F6 Small nuclear ribonucleoprotein Sm D15.8e-2872.09Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV
        L++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  AV
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAV

Q9SSF1 Small nuclear ribonucleoprotein SmD1a2.8e-3890.59Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        LNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

Q9SY09 Small nuclear ribonucleoprotein SmD1b1.8e-4089.01Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSG
        LNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA  + +G
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSG

Arabidopsis top hitse value%identityAlignment
AT3G07590.1 Small nuclear ribonucleoprotein family protein2.0e-3990.59Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        LNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

AT3G07590.2 Small nuclear ribonucleoprotein family protein2.0e-3990.59Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        LNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

AT4G02840.1 Small nuclear ribonucleoprotein family protein1.2e-4189.01Show/hide
Query:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSG
        LNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA  + +G
Subjt:  LNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSG

AT4G02840.2 Small nuclear ribonucleoprotein family protein3.4e-3980.2Show/hide
Query:  LNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKS
        LNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA  + +
Subjt:  LNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKS

Query:  G
        G
Subjt:  G

AT5G54390.1 HAL2-like1.2e-1546.39Show/hide
Query:  EVSSTDDSGLATFCEPVGKRNSNHSFTAGMAHCVGLR------------------------------YQEKIWDHAAGIIIAEAARGVVTDSGGRLL
        +VSS DD  LAT CEPV + NSNH FTAG+A+ +G+R                              Y+EKIWDHAAG++I E A GVVTD+GGR L
Subjt:  EVSSTDDSGLATFCEPVGKRNSNHSFTAGMAHCVGLR------------------------------YQEKIWDHAAGIIIAEAARGVVTDSGGRLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGCACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGT
GAAACTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGTAACAACATCAGATATTATATTCTACCCGACAGCTTGAATCTTGAGACTTTAC
TTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGTGCCTCTAAAATCAGGTCTCCCGACGGTTTATGGTGAAGTTTCTTCCACTGATGACTCAGGACTT
GCAACTTTCTGTGAACCTGTGGGGAAGCGCAACTCAAACCACTCATTCACCGCAGGGATGGCTCACTGTGTAGGGCTTAGATACCAAGAGAAGATATGGGACCATGCTGC
TGGTATTATCATTGCAGAAGCAGCGAGAGGTGTGGTAACAGATTCCGGAGGTCGTCTGTTACTTAGAAGATCCCCATCGGGGAATATTGGGATTCTTCCAGTCTATACAG
TCAACCCTACACATGATTGCATTGACCGACGACTAGTGTTCGTGATCGAGAGGATCATCGTAGCCATTAGAAAGAAACTTAGCAGAATGCTTTGGAAACGCATCAGAAAG
ATTCTCATCCAAAACCCTCCTCTTTCTCCAGCTGAAAAACCAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGCACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGT
GAAACTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGTAACAACATCAGATATTATATTCTACCCGACAGCTTGAATCTTGAGACTTTAC
TTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGTGCCTCTAAAATCAGGTCTCCCGACGGTTTATGGTGAAGTTTCTTCCACTGATGACTCAGGACTT
GCAACTTTCTGTGAACCTGTGGGGAAGCGCAACTCAAACCACTCATTCACCGCAGGGATGGCTCACTGTGTAGGGCTTAGATACCAAGAGAAGATATGGGACCATGCTGC
TGGTATTATCATTGCAGAAGCAGCGAGAGGTGTGGTAACAGATTCCGGAGGTCGTCTGTTACTTAGAAGATCCCCATCGGGGAATATTGGGATTCTTCCAGTCTATACAG
TCAACCCTACACATGATTGCATTGACCGACGACTAGTGTTCGTGATCGAGAGGATCATCGTAGCCATTAGAAAGAAACTTAGCAGAATGCTTTGGAAACGCATCAGAAAG
ATTCTCATCCAAAACCCTCCTCTTTCTCCAGCTGAAAAACCAAACTAA
Protein sequenceShow/hide protein sequence
MKLLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAVPLKSGLPTVYGEVSSTDDSGL
ATFCEPVGKRNSNHSFTAGMAHCVGLRYQEKIWDHAAGIIIAEAARGVVTDSGGRLLLRRSPSGNIGILPVYTVNPTHDCIDRRLVFVIERIIVAIRKKLSRMLWKRIRK
ILIQNPPLSPAEKPN