CuGenDBv2

Gene ID	CaUC11G201960
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Elongation factor 1-alpha
Genome location	Ciama_Chr11:1531366..1531686
RNA-Seq Expression	CaUC11G201960
Synteny	CaUC11G201960
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0003746 - translation elongation factor activity (molecular function) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

AAQ15280.1 elongation factor 1 alpha, partial [Pyrus pyrifolia]

2.9e-40

96.43

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ+HEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

TYK05697.1 elongation factor 1-alpha-like [Cucumis melo var. makuwa]

9.9e-41

98.81

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS+SRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

XP_009342345.1 PREDICTED: elongation factor 1-alpha-like [Pyrus x bretschneideri]

2.9e-40

96.43

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ+HEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

XP_011655323.2 elongation factor 1-alpha [Cucumis sativus]

9.9e-41

98.81

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS+SRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

XP_038889982.1 elongation factor 1-alpha [Benincasa hispida]

4.5e-41

100

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KNN9 Elongation factor 1-alpha

4.8e-41

98.81

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS+SRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

A0A5D3C1K1 Elongation factor 1-alpha

4.8e-41

98.81

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS+SRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

A0A5N5FUJ8 Elongation factor 1-alpha

1.4e-40

96.43

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ+HEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

A5C4C2 Elongation factor 1-alpha

2.4e-40

96.43

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS+SRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALD +HEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

Q7X9D2 Elongation factor 1 alpha (Fragment)

1.4e-40

96.43

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ+HEPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

SwissProt top hits

e value

%identity

Alignment

O64937 Elongation factor 1-alpha

2.5e-42

95.24

Show/hide

Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

P0DH99 Elongation factor 1-alpha 1

3.2e-42

94.05

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

P17786 Elongation factor 1-alpha

2.5e-42

95.24

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

Q0WL56 Elongation factor 1-alpha 3

3.2e-42

94.05

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

Q8W4H7 Elongation factor 1-alpha 2

3.2e-42

94.05

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Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

Arabidopsis top hits

e value

%identity

Alignment

AT1G07920.1 GTP binding Elongation factor Tu family protein

2.3e-43

94.05

Show/hide

Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

AT1G07930.1 GTP binding Elongation factor Tu family protein

2.3e-43

94.05

Show/hide

Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

AT1G07930.2 GTP binding Elongation factor Tu family protein

2.3e-43

94.05

Show/hide

Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

AT1G07940.1 GTP binding Elongation factor Tu family protein

2.3e-43

94.05

Show/hide

Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

AT1G07940.2 GTP binding Elongation factor Tu family protein

2.3e-43

94.05

Show/hide

Query:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL
        MDATTPKYS++RYDEI+KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ++EPKRPSDKPLRLPL
Subjt:  MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPL

Sequences

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CDS sequence

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ATGGATGCCACGACTCCCAAATACTCTAGGTCTAGGTACGATGAAATCGTCAAGGAAGTTTCATCCTACCTCAAGAAGGTTGGGTACAACCCAGACAAAATTCCCTTCGT
CCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACAAACCTCGACTGGTACAAGGGCCCTACCCTTCTGGAGGCTCTCGACCAAGTCCATGAGCCTAAGA
GACCATCAGACAAACCCCTTCGTCTTCCACTTCANTTAAAAACGGCTCTAAGAAACCAAAAGACAACAGATATTAGAGGATGGTCCATTTTGAAAACATAG

mRNA sequence

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Protein sequence

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MDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLXLKTALRNQKTTDIRGWSILKT

CaUC11G201960 (gene) of Watermelon (USVL246-FR2) v1 genome