; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G202560 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G202560
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description60S ribosomal protein L18a-like protein
Genome locationCiama_Chr11:2104764..2108060
RNA-Seq ExpressionCaUC11G202560
SyntenyCaUC11G202560
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]2.8e-7690.2Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS++DKSA VGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PGV DSDDPSQYQ YAHGYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFL AIPWYAGA+LI+CGRVDYREKPGYVACSIAAV+ATVAIIFGAT+EADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]3.0e-7892.16Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG+SDSDDPSQYQ YAHGYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFL AIPWYAGA+LILCGRVDYREKPGYVACSIAAV+AT+AIIFGAT+EADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_022976878.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]6.0e-7187.58Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ Q YAHGYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F LPA  WY GA+LILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_023536200.1 60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]1.6e-7188.24Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ QQYAHGYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F LPA  WY GA+LILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]1.3e-7893.46Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHESNSGHP YGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQ YAHGYQAVPGY IVEGRPVRE+RLPCCGIGIGWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFL AIPWYAGA+LILCGRVDYREKPGYVAC IAAVLATVAIIFGAT+EAD W
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein1.3e-7690.2Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MS++DKSA VGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PGV DSDDPSQYQ YAHGYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFL AIPWYAGA+LI+CGRVDYREKPGYVACSIAAV+ATVAIIFGAT+EADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein1.4e-7892.16Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG+SDSDDPSQYQ YAHGYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFL AIPWYAGA+LILCGRVDYREKPGYVACSIAAV+AT+AIIFGAT+EADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A5D3D9U1 60S ribosomal protein L18a-like protein1.4e-7892.16Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG+SDSDDPSQYQ YAHGYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        FFL AIPWYAGA+LILCGRVDYREKPGYVACSIAAV+AT+AIIFGAT+EADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A6J1F8P0 60S ribosomal protein L18a-like protein8.4e-7186.27Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ + YAHGYQ V GYA+VEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F LPA  WY GA+LILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

A0A6J1INF5 60S ribosomal protein L18a-like protein2.9e-7187.58Show/hide
Query:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG
        MSQEDKSA VGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPGVSD DD SQ Q YAHGYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIG
Subjt:  MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIG

Query:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        F LPA  WY GA+LILCGRV YREKPGYVACSIAAV+ATVAIIFGATK ADVW
Subjt:  FFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein1.5e-2947.22Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWY
        +YGTFQGVAN     FP PT PP       P        YQ          YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWY

Query:  AGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
         GA ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  AGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family2.4e-4661.11Show/hide
Query:  ESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGY-AIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWYA
        E  + H  YGTFQGV+NYPP        GFPQP+ PPGV DS  P     YAHGYQ VP +  + EGRPVR++RLPCCGIG+GWFLFI+GFFL AIPWY 
Subjt:  ESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGY-AIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWYA

Query:  GAVLILCG-RVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        G  +++ G R+DYREKPGY+AC+IAA+LAT+A+I G +K AD W
Subjt:  GAVLILCG-RVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

AT1G29970.1 60S ribosomal protein L18A-11.1e-3047.22Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWY
        +YGTFQGVAN     FP PT PP       P        YQ          YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWY

Query:  AGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
         GA ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  AGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

AT1G29970.2 60S ribosomal protein L18A-11.6e-2650.4Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWY
        +YGTFQGVAN     FP PT PP       P        YQ          YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF    IPWY
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWY

Query:  AGAVLILCGRVDYREKPGYVACSIA
         GA ++L   VD+REK GYVACSIA
Subjt:  AGAVLILCGRVDYREKPGYVACSIA

AT1G29970.3 60S ribosomal protein L18A-11.5e-2436.56Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFL-------------
        +YGTFQGVAN     FP PT PP       P        YQ          YA G+   VP Y +VE RP+ E  LPCCG+G+GWFL             
Subjt:  HYGTFQGVANYPPVGFPQPTRPPGVSDSDDP------SQYQ---------QYAHGYQ-AVPGYAIVEGRPVREQRLPCCGIGIGWFL-------------

Query:  -----------------------------FIIGFFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
                                     FI+GF    IPWY GA ++L   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  -----------------------------FIIGFFLPAIPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW

AT1G53560.1 Ribosomal protein L18ae family6.4e-3953.24Show/hide
Query:  YGTFQGVANYPP------------VGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWYAGAVL
        YGTFQGV  YPP            +G PQP+ PPG    D      QY   +Q V GY + +GRP R+ RLPCCG+G+GWFLFIIGF L AIPWY G  +
Subjt:  YGTFQGVANYPP------------VGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPAIPWYAGAVL

Query:  ILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW
        ++C R+D REKPGYVAC+IAAV+AT+ I+FG      VW
Subjt:  ILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAGGAAGACAAATCCGCCACTGTGGGTGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCACTACGGAACCTTCCAAGGCGTCGCTAAC
TATCCTCCCGTCGGATTTCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTCCGACGATCCTTCTCAATATCAGCAATATGCTCATGGCTATCAAGCTGTCCCC
GGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCAGCGCCTTCCTTGCTGCGGTATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTCCTGCT
ATCCCATGGTATGCTGGAGCAGTTCTTATACTATGTGGCAGGGTAGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGCCACAGTT
GCAATTATTTTCGGTGCCACAAAGGAAGCCGATGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCAGGAAGACAAATCCGCCACTGTGGGTGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCACTACGGAACCTTCCAAGGCGTCGCTAAC
TATCCTCCCGTCGGATTTCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTCCGACGATCCTTCTCAATATCAGCAATATGCTCATGGCTATCAAGCTGTCCCC
GGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCAGCGCCTTCCTTGCTGCGGTATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTCCTGCT
ATCCCATGGTATGCTGGAGCAGTTCTTATACTATGTGGCAGGGTAGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGCCACAGTT
GCAATTATTTTCGGTGCCACAAAGGAAGCCGATGTCTGGTAA
Protein sequenceShow/hide protein sequence
MSQEDKSATVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQQYAHGYQAVPGYAIVEGRPVREQRLPCCGIGIGWFLFIIGFFLPA
IPWYAGAVLILCGRVDYREKPGYVACSIAAVLATVAIIFGATKEADVW