CuGenDBv2

Gene ID	CaUC11G203370
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Genome location	Ciama_Chr11:2809736..2818764
RNA-Seq Expression	CaUC11G203370
Synteny	CaUC11G203370
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0031083 - BLOC-1 complex (cellular component)
InterPro domains	IPR017246 - Snapin IPR028119 - Snapin/Pallidin/Snn1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_038897515.1 uncharacterized protein LOC120085558 isoform X1 [Benincasa hispida]

2.2e-60

91.61

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897518.1 uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]

4.9e-60

85.35

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPVEEEAYEEAQEKAQ
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP  +    E   +AQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPVEEEAYEEAQEKAQ

XP_038897519.1 uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]

7.5e-61

91.67

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPV
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPV
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPV

XP_038897521.1 uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]

2.2e-60

91.61

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

XP_038897522.1 uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]

2.2e-60

91.61

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 7

3.4e-59

90.21

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MH PEKLD DYSA  DSNVSAELETSISP GDLQEGNDGENKN+GNSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAI+MGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 7

6.7e-47

80.42

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHSPEK+  D  A  DS+VS ELETSIS NGDL+E ND  N N+ NSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD    +LDQLLE APFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAISMGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1FHK0 Biogenesis of lysosome-related organelles complex 1 subunit 7

3.0e-47

74.19

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHS EK+  D SA  DS VSAELE SISPNGD++E ND  N N+G+SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPVEEEAYEEAQEK
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLP  E   E  +E+
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPVEEEAYEEAQEK

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 7

5.1e-47

78.32

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHS EK+  D SA  DS VSAELE SISPNGD++E ND  N N+G+SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 7

1.8e-47

80.42

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Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP
        MHSPEK+  D  A  DS+ S ELETSIS NG+L+E ND  N N+ NSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD    +LDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP
        FIMQHASRIS+VRKRVLSLNSILR+IQRR+DNIDRAISMGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G79070.1 SNARE-associated protein-related

3.5e-24

47.62

Show/hide

Query:  ADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFPFIMQHASRISNVRK
        +D   SA+  TS   +   ++G  G     G   A+A GLS+ML ++I+DFDSKA DTL SQ +LS SLD    +LDQLLE+AP PFI+QHASRIS+V++
Subjt:  ADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLD----QLDQLLEDAPFPFIMQHASRISNVRK

Query:  RVLSLNSILRTIQRRVDNIDRAISMGNLPVEEEAYEEAQEKAQKDET
        RV SLN +L+++QRR+DNID  +S              QEKA  + T
Subjt:  RVLSLNSILRTIQRRVDNIDRAISMGNLPVEEEAYEEAQEKAQKDET

Sequences

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CDS sequence

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ATGACGAAGAGAGTTGTGAAGGAGGGAAGTCGAAGACAGTCGCGAAGGAGGAAAGTCGCACGTACAAGGGACGGGTGGGGCCGAATGAAGTCAGTTCTGCATGAGGTCAG
TTTGGTTGAGAATAGAAGAACCTTGCCTAAGTGTGTTGCTGACTTTAGATTTAGGGAAAACTCAAGCGTTGGGTCGCCGGACTGTTCGCATCGCTCGCCGGAAGTCGAGA
ATCCGTGGGTGTCGGATTTTCTGTGCCGTGTGGTTCACCGGAAGCTGCCACGCGTGATTCGCCGGGCGTTGCTGAGTTGTGGAGCTCGCTGGAGCAATTTGGCTGAGATG
CACAGTCCGGAGAAATTGGATGGCGATTATTCTGCCACTGCGGACAGCAACGTCTCGGCTGAATTGGAGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAATGA
TGGTGAAAATAAGAACATAGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTCGACTCCAAAGCTGATGATACTCTTAAAA
GCCAGAGCCAGCTTTCATCTTCCCTCGATCAATTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGA
GTTTTGTCACTAAATTCCATCTTAAGAACCATACAGCGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGTGGAAGAAGAAGCGTATGAGGAGGC
TCAAGAGAAAGCGCAGAAAGATGAGACAGAGATCTAA

mRNA sequence

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Protein sequence

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MTKRVVKEGSRRQSRRRKVARTRDGWGRMKSVLHEVSLVENRRTLPKCVADFRFRENSSVGSPDCSHRSPEVENPWVSDFLCRVVHRKLPRVIRRALLSCGARWSNLAEM
HSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDQLDQLLEDAPFPFIMQHASRISNVRKR
VLSLNSILRTIQRRVDNIDRAISMGNLPVEEEAYEEAQEKAQKDETEI

CaUC11G203370 (gene) of Watermelon (USVL246-FR2) v1 genome