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CaUC11G204010 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G204010
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description3-isopropylmalate dehydratase large subunit, chloroplastic isoform B
Genome locationCiama_Chr11:3469742..3472164
RNA-Seq ExpressionCaUC11G204010
SyntenyCaUC11G204010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591893.1 Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4482.91Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ A+K LRT+T+ATNNNTLINVCLV+SF ALSARSIKQQREI+ALEAEKDSLLNSNKSLKKTMWDWKQQL+++AST+SA VPLARIKAIYGEAP+SPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG

Query:  AGHVTTEDANSQGSKLM
        A    T DANSQGSKLM
Subjt:  AGHVTTEDANSQGSKLM
XP_022140674.1 uncharacterized protein LOC111011272 [Momordica charantia]6.3e-4483.19Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPI-SPS
        M+ A+K LRTLTNA+NN TLINVCLVVSF ALSARSIKQQREI+ALEAEKDSLLNSNK+LKK+MWDWKQQLFAEAS+ESA VPLARIKAIYGE PI SP+
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPI-SPS

Query:  GAGHVTTEDANSQGSKLMV
        GAGH  TED NSQGSK +V
Subjt:  GAGHVTTEDANSQGSKLMV
XP_022937146.1 uncharacterized protein LOC111443531 [Cucurbita moschata]7.4e-4583.05Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ A+K LRT+T+ATNNNTLINVCLV+SF ALSARSIKQQREI+ALEAEKDSLLNSNKSLKKTMWDWKQQL+++AST+SA VPLARIKAIYGEAP+SPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG

Query:  AGHVTTEDANSQGSKLMV
        A    T DANSQGSKLMV
Subjt:  AGHVTTEDANSQGSKLMV
XP_022976887.1 uncharacterized protein LOC111477117 [Cucurbita maxima]2.5e-4583.9Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ ASK LRTLTNATNNNTLINVCLV+SF ALSARSIKQQREI+ALEAEKDSLLNSNK+LKKTMWDWKQQL++EAST+SA +PLARIKAIY EAP+SPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG

Query:  AGHVTTEDANSQGSKLMV
        A    T DANSQGSKLMV
Subjt:  AGHVTTEDANSQGSKLMV
XP_038897052.1 uncharacterized protein LOC120085226 [Benincasa hispida]5.5e-4888.98Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ ASK LRT+TNATNNNTLINVCLV+SF ALSARSIKQQREI+ALEAEK SLLNSNK+LKKTMWDWKQQLFAEAST+SA VPLARIKAIYGEAPISPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG

Query:  AGHVTTEDANSQGSKLMV
         GHV TEDANSQGSKLMV
Subjt:  AGHVTTEDANSQGSKLMV
TrEMBL top hitse value%identityAlignment
A0A0A0L380 Uncharacterized protein4.7e-3785Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ ASK LR+L NATN NT+INVCLVVSFAAL+ARSIKQ+R+I+ALE EK+SLLNSNK+LKKTMWDWKQQLFAEASTESA VPLARIKAIYGEAPISPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
A0A1S3B9R7 uncharacterized protein LOC1034875833.1e-4179.66Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ ASK LR L+N  N NTLINVCLV SFAALSARSIKQ+R+I+ALEAEK+SLL+SNK+LKKTMWDWKQQLFAEAST+SA VPLARIKAIYGEAPISPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG

Query:  AGHVTTEDANSQGSKLMV
        A +  TEDA S+ SKLMV
Subjt:  AGHVTTEDANSQGSKLMV
A0A6J1CGB8 uncharacterized protein LOC1110112723.0e-4483.19Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPI-SPS
        M+ A+K LRTLTNA+NN TLINVCLVVSF ALSARSIKQQREI+ALEAEKDSLLNSNK+LKK+MWDWKQQLFAEAS+ESA VPLARIKAIYGE PI SP+
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPI-SPS

Query:  GAGHVTTEDANSQGSKLMV
        GAGH  TED NSQGSK +V
Subjt:  GAGHVTTEDANSQGSKLMV
A0A6J1F9J6 uncharacterized protein LOC1114435313.6e-4583.05Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ A+K LRT+T+ATNNNTLINVCLV+SF ALSARSIKQQREI+ALEAEKDSLLNSNKSLKKTMWDWKQQL+++AST+SA VPLARIKAIYGEAP+SPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG

Query:  AGHVTTEDANSQGSKLMV
        A    T DANSQGSKLMV
Subjt:  AGHVTTEDANSQGSKLMV
A0A6J1IGY3 uncharacterized protein LOC1114771171.2e-4583.9Show/hide
Query:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG
        M+ ASK LRTLTNATNNNTLINVCLV+SF ALSARSIKQQREI+ALEAEKDSLLNSNK+LKKTMWDWKQQL++EAST+SA +PLARIKAIY EAP+SPSG
Subjt:  MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSG

Query:  AGHVTTEDANSQGSKLMV
        A    T DANSQGSKLMV
Subjt:  AGHVTTEDANSQGSKLMV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48200.1 unknown protein1.7e-2348.72Show/hide
Query:  ASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEAST--ESASVPLARIKAIYGEAPISPSGA
        A+KI   L+ A NNN +IN CL VSF  L  RS KQQ+ ++AL  +K+SL  SNK++K TMW+WKQQLFAEA++   +A VPL+ +KAIYGE   + + +
Subjt:  ASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEAST--ESASVPLARIKAIYGEAPISPSGA

Query:  GHVTTEDANSQGSKLMV
        G    ED+     K+M+
Subjt:  GHVTTEDANSQGSKLMV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTGCCTCCAAAATTCTTCGCACTTTAACCAATGCCACCAACAACAACACCCTTATCAACGTCTGTTTGGTTGTTTCCTTTGCGGCACTGAGCGCAAGATCAAT
TAAGCAGCAGAGGGAAATTGATGCTCTGGAGGCGGAGAAAGATTCACTTCTGAATTCCAATAAATCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTCTTCGCCG
AAGCCTCAACCGAATCCGCTTCGGTTCCTCTCGCCAGAATCAAAGCTATCTATGGCGAAGCTCCGATTTCCCCTTCCGGAGCAGGGCATGTCACAACCGAAGATGCAAAT
TCACAAGGCTCCAAACTTATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTGCCTCCAAAATTCTTCGCACTTTAACCAATGCCACCAACAACAACACCCTTATCAACGTCTGTTTGGTTGTTTCCTTTGCGGCACTGAGCGCAAGATCAAT
TAAGCAGCAGAGGGAAATTGATGCTCTGGAGGCGGAGAAAGATTCACTTCTGAATTCCAATAAATCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTCTTCGCCG
AAGCCTCAACCGAATCCGCTTCGGTTCCTCTCGCCAGAATCAAAGCTATCTATGGCGAAGCTCCGATTTCCCCTTCCGGAGCAGGGCATGTCACAACCGAAGATGCAAAT
TCACAAGGCTCCAAACTTATGGTTTAA
Protein sequenceShow/hide protein sequence
MEFASKILRTLTNATNNNTLINVCLVVSFAALSARSIKQQREIDALEAEKDSLLNSNKSLKKTMWDWKQQLFAEASTESASVPLARIKAIYGEAPISPSGAGHVTTEDAN
SQGSKLMV