; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G204530 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G204530
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptiondehydration-responsive element-binding protein 3-like
Genome locationCiama_Chr11:4007090..4007746
RNA-Seq ExpressionCaUC11G204530
SyntenyCaUC11G204530
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR016177 - DNA-binding domain superfamily
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024616.1 Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-7672.32Show/hide
Query:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
        MS  + SQI+Q SS+  N QS PN +   DSSKHP+YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
Subjt:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP

Query:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY--
        RPVSFAPRDVQAAAAKAAHMDP    YS                  DDSDEL+EIVKLP+L +NY     NNEFVLMDST+GWVYPPPWLRTM+D  Y  
Subjt:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY--

Query:  --NTNNIIDDLGIGVGDSNCLWDY
          N NNIID++GI  GDSN LWDY
Subjt:  --NTNNIIDDLGIGVGDSNCLWDY

XP_022936152.1 dehydration-responsive element-binding protein 3-like [Cucurbita moschata]2.3e-7672.65Show/hide
Query:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
        MS  + SQI+Q SS+  N QS PN +   DSSKHP+YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
Subjt:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP

Query:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY--
        RPVSFAPRDVQAAAAKAAHMDP    YS                  DDSDEL+EIVKLP+L +NY     NNEFVLMDST+GWVYPPPWLRTM+D  Y  
Subjt:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY--

Query:  -NTNNIIDDLGIGVGDSNCLWDY
         N NNIID++GI  GDSN LWDY
Subjt:  -NTNNIIDDLGIGVGDSNCLWDY

XP_022976323.1 dehydration-responsive element-binding protein 3-like [Cucurbita maxima]2.7e-7770.87Show/hide
Query:  MSTKEESQISQ--------HSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPE
        MS  + SQI+Q        +SSNN QS PN +   DSSKHP+YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSA LNFPE
Subjt:  MSTKEESQISQ--------HSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPE

Query:  LAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTME
        LAHSLPRPVSFAPRDVQAAAAKAAHMDP    YS                  DDSDEL+EIVKLP+L +NY     NNEFVLMDST+GWVYPPPWLRTM+
Subjt:  LAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTME

Query:  DCGY----NTNNIIDDLGIGVGDSNCLWDY
        DC Y    N NNIID++GI  GDSN LWDY
Subjt:  DCGY----NTNNIIDDLGIGVGDSNCLWDY

XP_023535238.1 dehydration-responsive element-binding protein 3-like [Cucurbita pepo subsp. pepo]6.7e-7672.27Show/hide
Query:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
        MS  + SQI+Q SS+  N QS PN +   DSSKHP+YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
Subjt:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP

Query:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNT
        RPVSFAPRDVQAAAAKAAHMDP    YS                  DDSDEL+EIVKLP+L +NY     NNEFVLMDST+GWVYPPPWLRTM+DC YN 
Subjt:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNT

Query:  NNIIDDLGIGVGDSNCLWDY
        N    D  +G+GDSN LWDY
Subjt:  NNIIDDLGIGVGDSNCLWDY

XP_038899086.1 ethylene-responsive transcription factor TINY-like [Benincasa hispida]2.6e-8885.31Show/hide
Query:  SSNNNQSK--PNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQA
        S+N NQSK  PNKR+  DS+KHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP+LAHSLPRPVSFAPRDVQA
Subjt:  SSNNNQSK--PNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQA

Query:  AAAKAAHM-DPNFLHYSPNSPVSTSPSPSPSSAA-DDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY-NTNNIIDDLGI
        AAAKAA+M DPNF H+SP SPVSTS SPSPSSAA DDDSDELTEIVKLPTL SNYDH     EFVLMDS EGWVYPPPWLRTMEDCGY N+NNI+D+ GI
Subjt:  AAAKAAHM-DPNFLHYSPNSPVSTSPSPSPSSAA-DDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY-NTNNIIDDLGI

Query:  GVGDSNCLWDY
          GDSN LWDY
Subjt:  GVGDSNCLWDY

TrEMBL top hitse value%identityAlignment
A0A0A0LHV3 AP2 domain class transcription factor4.4e-7370.82Show/hide
Query:  TKEESQISQHSSNNNQSKP---------NKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL
        T  +SQIS  ++N+ Q  P         NKR+    S   +YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL
Subjt:  TKEESQISQHSSNNNQSKP---------NKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL

Query:  AHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADD-DSDELTEIVKLPTL-GSNYDHFISNNEFVLMDSTEGWVYPPPWLRTM
        AHSLPRPVSFAPRD+QAAA+KAAHMD NF HYS  S  S S S SPSS  DD D  EL+EIVKLPTL  SNYD    ++EFVLMDSTEGWVYPPPWLRTM
Subjt:  AHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADD-DSDELTEIVKLPTL-GSNYDHFISNNEFVLMDSTEGWVYPPPWLRTM

Query:  ED--CGYNTNNIIDDLGIGVGD----SNCLWDY
        ED   GY+TNNI D+LGI +GD    SN  WDY
Subjt:  ED--CGYNTNNIIDDLGIGVGD----SNCLWDY

A0A1S3CQC6 dehydration-responsive element-binding protein 3-like1.5e-6868.22Show/hide
Query:  TKEESQISQHSSNNN--QSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRP
        T ++SQI++ + +NN   S  +KR+ A  S   +YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRP
Subjt:  TKEESQISQHSSNNN--QSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRP

Query:  VSFAPRDVQAAAAKAAH--------MDPNFLHYSPNS---PVSTSPSP-SPSSAA--DDDSDELTEIVKLPTL-GSNYDHFISNNEFVLMDSTEGWVYPP
        VS APRD+QAAAAKAAH         +P+    S +S    VSTS SP SPSS+   DDD  ELTEIVKLPTL  SNYD    ++EFVLMDSTEGWVYPP
Subjt:  VSFAPRDVQAAAAKAAH--------MDPNFLHYSPNS---PVSTSPSP-SPSSAA--DDDSDELTEIVKLPTL-GSNYDHFISNNEFVLMDSTEGWVYPP

Query:  PWLRTMED--CGYNTNNIIDDLGIG-VGDSNCLWDY
        PWLRT+ED   GY+TNNI D+LGIG    SN  WDY
Subjt:  PWLRTMED--CGYNTNNIIDDLGIG-VGDSNCLWDY

A0A6J1F7M6 dehydration-responsive element-binding protein 3-like1.1e-7672.65Show/hide
Query:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
        MS  + SQI+Q SS+  N QS PN +   DSSKHP+YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP
Subjt:  MSTKEESQISQHSSN--NNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLP

Query:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY--
        RPVSFAPRDVQAAAAKAAHMDP    YS                  DDSDEL+EIVKLP+L +NY     NNEFVLMDST+GWVYPPPWLRTM+D  Y  
Subjt:  RPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGY--

Query:  -NTNNIIDDLGIGVGDSNCLWDY
         N NNIID++GI  GDSN LWDY
Subjt:  -NTNNIIDDLGIGVGDSNCLWDY

A0A6J1FNI3 dehydration-responsive element-binding protein 3-like1.8e-6668.78Show/hide
Query:  MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG-NSAILNFPELAHSLPR
        MS  EE      S  ++ S  + +   DSSKHP+YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG NSAILNFPELAHSLPR
Subjt:  MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG-NSAILNFPELAHSLPR

Query:  PVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEG-WVYPPPWLRTMEDCGYNT
        P SFAPRD+QAAAAKAAHMDP+                S SSAA DDSD+L EI+KLP LG+NYDH I NNEFVLMDS+E  W YPPPW+RTMED   + 
Subjt:  PVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEG-WVYPPPWLRTMEDCGYNT

Query:  NNIID
        N + D
Subjt:  NNIID

A0A6J1ILS4 dehydration-responsive element-binding protein 3-like1.3e-7770.87Show/hide
Query:  MSTKEESQISQ--------HSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPE
        MS  + SQI+Q        +SSNN QS PN +   DSSKHP+YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSA LNFPE
Subjt:  MSTKEESQISQ--------HSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPE

Query:  LAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTME
        LAHSLPRPVSFAPRDVQAAAAKAAHMDP    YS                  DDSDEL+EIVKLP+L +NY     NNEFVLMDST+GWVYPPPWLRTM+
Subjt:  LAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTME

Query:  DCGY----NTNNIIDDLGIGVGDSNCLWDY
        DC Y    N NNIID++GI  GDSN LWDY
Subjt:  DCGY----NTNNIIDDLGIGVGDSNCLWDY

SwissProt top hitse value%identityAlignment
O80654 Ethylene-responsive transcription factor ERF0378.6e-4252.86Show/hide
Query:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA
        EE     H  +++++   KR+ +D    P YRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHD AAL+IKG SA+LNFPELA  LPRP S +
Subjt:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA

Query:  PRDVQAAAAKAAHMDPNFLHYSPNS------------------------PVSTSPSPSPSS-AADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTE
        PRDVQAAAA AA MD     +SP+S                           TS S SPSS  A   ++EL+EIV+LP+L ++YD  +S  EFV +DS  
Subjt:  PRDVQAAAAKAAHMDPNFLHYSPNS------------------------PVSTSPSPSPSS-AADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTE

Query:  GWVYPP--PW
           YPP  PW
Subjt:  GWVYPP--PW

Q39127 Ethylene-responsive transcription factor TINY9.5e-4958.25Show/hide
Query:  STKE-ESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRP
        STK  E+   +  +   + KP K    DS KHP+YRGVR R WGKWVSEIREPRKKSRIWLGTFP+PEMAARAHDVAALSIKG SAILNFP+LA S PRP
Subjt:  STKE-ESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRP

Query:  VSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPS------SAADDDSDELTEIVKLPTLGSNYDHFIS-NNEFVLMDSTEGWVYPPPW
         S +PRD+Q AA KAAHM+ +   +S +S ++ S S S S      S++   S+EL EIV+LP+LGS+YD      NEF+  DS + W YPP W
Subjt:  VSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPS------SAADDDSDELTEIVKLPTLGSNYDHFIS-NNEFVLMDSTEGWVYPPPW

Q52QU1 Ethylene-responsive transcription factor ERF0421.9e-4147.21Show/hide
Query:  ISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDV
        +  H S+   S   K+    + +  +YRG RMR+WGKWVSEIREPRKKSRIWLGTFPT EMAARAHDVAALSIKG+SAILNFPELA  LPRPVS + +D+
Subjt:  ISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDV

Query:  QAAAAKAAHMDPNFLHY----------------------SPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPP
        QAAAA+AA MD   + +                      S +S  S+S S S SS++   S EL +IV+LP+L +N  +     +  L DS EG V  PP
Subjt:  QAAAAKAAHMDPNFLHY----------------------SPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPP

Query:  WL-RTMEDCGYNTNNIIDDLGIGVGDSNCLWDY
        WL  T  D  Y  ++++ D  +     + LW+Y
Subjt:  WL-RTMEDCGYNTNNIIDDLGIGVGDSNCLWDY

Q9LYD3 Dehydration-responsive element-binding protein 31.1e-5259.2Show/hide
Query:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA
        E   +S  S      K  KR   DS KHP+YRGVRMR WGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG +AILNFPELA S PRPVS +
Subjt:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA

Query:  PRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADD----------DSDELTEIVKLPTLGSNYDHFISN--NEFVLMDSTEGWVYPPPWLRTME
        PRD+Q AA KAAHM+P     S +S  S+S S S +S+ +           +S+EL EIV+LP+LG++YD   +N  NEFV  DS +  +YPPPW ++ E
Subjt:  PRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADD----------DSDELTEIVKLPTLGSNYDHFISN--NEFVLMDSTEGWVYPPPWLRTME

Query:  D
        D
Subjt:  D

Q9M080 Ethylene-responsive transcription factor ERF0432.9e-4552.86Show/hide
Query:  SSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAA
        SS++ + K N       +K P+YRGVRMR+WGKWVSEIREPRKKSRIWLGTFPT EMA RAHDVAA+SIKG SAILNFPEL+  LPRPVS +PRDV+AAA
Subjt:  SSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAA

Query:  AKAAHMD---PNFLHYSPNSPVSTSPSPSPSSAADDD-------------------SDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRT
         KAA MD     F   +  S  +TS   S SS +++                    SD+L EIVKLP+LG++ +    +NEFV+ DS E  VY P WL  
Subjt:  AKAAHMD---PNFLHYSPNSPVSTSPSPSPSSAADDD-------------------SDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRT

Query:  MEDCGYNTNN
         E+  +  NN
Subjt:  MEDCGYNTNN

Arabidopsis top hitse value%identityAlignment
AT1G77200.1 Integrase-type DNA-binding superfamily protein6.1e-4352.86Show/hide
Query:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA
        EE     H  +++++   KR+ +D    P YRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHD AAL+IKG SA+LNFPELA  LPRP S +
Subjt:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA

Query:  PRDVQAAAAKAAHMDPNFLHYSPNS------------------------PVSTSPSPSPSS-AADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTE
        PRDVQAAAA AA MD     +SP+S                           TS S SPSS  A   ++EL+EIV+LP+L ++YD  +S  EFV +DS  
Subjt:  PRDVQAAAAKAAHMDPNFLHYSPNS------------------------PVSTSPSPSPSS-AADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTE

Query:  GWVYPP--PW
           YPP  PW
Subjt:  GWVYPP--PW

AT2G25820.1 Integrase-type DNA-binding superfamily protein1.4e-4247.21Show/hide
Query:  ISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDV
        +  H S+   S   K+    + +  +YRG RMR+WGKWVSEIREPRKKSRIWLGTFPT EMAARAHDVAALSIKG+SAILNFPELA  LPRPVS + +D+
Subjt:  ISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDV

Query:  QAAAAKAAHMDPNFLHY----------------------SPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPP
        QAAAA+AA MD   + +                      S +S  S+S S S SS++   S EL +IV+LP+L +N  +     +  L DS EG V  PP
Subjt:  QAAAAKAAHMDPNFLHY----------------------SPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPP

Query:  WL-RTMEDCGYNTNNIIDDLGIGVGDSNCLWDY
        WL  T  D  Y  ++++ D  +     + LW+Y
Subjt:  WL-RTMEDCGYNTNNIIDDLGIGVGDSNCLWDY

AT4G32800.1 Integrase-type DNA-binding superfamily protein2.0e-4652.86Show/hide
Query:  SSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAA
        SS++ + K N       +K P+YRGVRMR+WGKWVSEIREPRKKSRIWLGTFPT EMA RAHDVAA+SIKG SAILNFPEL+  LPRPVS +PRDV+AAA
Subjt:  SSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAA

Query:  AKAAHMD---PNFLHYSPNSPVSTSPSPSPSSAADDD-------------------SDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRT
         KAA MD     F   +  S  +TS   S SS +++                    SD+L EIVKLP+LG++ +    +NEFV+ DS E  VY P WL  
Subjt:  AKAAHMD---PNFLHYSPNSPVSTSPSPSPSSAADDD-------------------SDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRT

Query:  MEDCGYNTNN
         E+  +  NN
Subjt:  MEDCGYNTNN

AT5G11590.1 Integrase-type DNA-binding superfamily protein7.7e-5459.2Show/hide
Query:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA
        E   +S  S      K  KR   DS KHP+YRGVRMR WGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG +AILNFPELA S PRPVS +
Subjt:  EESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFA

Query:  PRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADD----------DSDELTEIVKLPTLGSNYDHFISN--NEFVLMDSTEGWVYPPPWLRTME
        PRD+Q AA KAAHM+P     S +S  S+S S S +S+ +           +S+EL EIV+LP+LG++YD   +N  NEFV  DS +  +YPPPW ++ E
Subjt:  PRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADD----------DSDELTEIVKLPTLGSNYDHFISN--NEFVLMDSTEGWVYPPPWLRTME

Query:  D
        D
Subjt:  D

AT5G25810.1 Integrase-type DNA-binding superfamily protein6.8e-5058.25Show/hide
Query:  STKE-ESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRP
        STK  E+   +  +   + KP K    DS KHP+YRGVR R WGKWVSEIREPRKKSRIWLGTFP+PEMAARAHDVAALSIKG SAILNFP+LA S PRP
Subjt:  STKE-ESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRP

Query:  VSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPS------SAADDDSDELTEIVKLPTLGSNYDHFIS-NNEFVLMDSTEGWVYPPPW
         S +PRD+Q AA KAAHM+ +   +S +S ++ S S S S      S++   S+EL EIV+LP+LGS+YD      NEF+  DS + W YPP W
Subjt:  VSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPS------SAADDDSDELTEIVKLPTLGSNYDHFIS-NNEFVLMDSTEGWVYPPPW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGG
CGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCC
ACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCC
GCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCCCCTCCCCCTCCTCCGCCGCCGACGACGACTC
CGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATC
CCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGG
CGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCC
ACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCC
GCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCCCCTCCCCCTCCTCCGCCGCCGACGACGACTC
CGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATC
CCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA
Protein sequenceShow/hide protein sequence
MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQA
AAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY