; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G205460 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G205460
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal protein L16
Genome locationCiama_Chr11:5132016..5133551
RNA-Seq ExpressionCaUC11G205460
SyntenyCaUC11G205460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS96821.1 Os06g0220100, partial [Oryza sativa Japonica Group]5.1e-1541.23Show/hide
Query:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR
        +++RR+++FP +  VR+V  +GG VHQ+  GV+R  +   ++ A RR LQR     L+EP+ ER+   +G     V ++ VH+H+    HQRR L TVHR
Subjt:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR

Query:  PVKRPSTLPWTLGR
         V+RP  LP  L R
Subjt:  PVKRPSTLPWTLGR

GER55536.1 50S ribosomal protein L16 [Striga asiatica]3.6e-1343.48Show/hide
Query:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH
        R+  RR+QI PP+  VR+V  +   V Q +  VSR  + PE+  A R RLQR     L  P  E +R   G+  RQV ++ VHS++  RRHQRR LR VH
Subjt:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH

Query:  RPVKRPSTLPWTLGR
        R V+RP      L R
Subjt:  RPVKRPSTLPWTLGR

KAB8101767.1 hypothetical protein EE612_032745, partial [Oryza sativa]5.1e-1541.23Show/hide
Query:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR
        +++RR+++FP +  VR+V  +GG VHQ+  GV+R  +   ++ A RR LQR     L+EP+ ER+   +G     V ++ VH+H+    HQRR L TVHR
Subjt:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR

Query:  PVKRPSTLPWTLGR
         V+RP  LP  L R
Subjt:  PVKRPSTLPWTLGR

KCW66564.1 hypothetical protein EUGRSUZ_F00363 [Eucalyptus grandis]3.1e-1242.48Show/hide
Query:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH
        RI + R Q+  P+  VR+V R    +HQ++PGV+R        GA RRRLQR    AL+ P+ ER+R   G++  QV ++ V   I + RHQRR LR V 
Subjt:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH

Query:  RPVKRPSTLPWTL
          V+RP  LP  L
Subjt:  RPVKRPSTLPWTL

RDX60926.1 hypothetical protein CR513_60891, partial [Mucuna pruriens]1.9e-1444.74Show/hide
Query:  DRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTV
        DR+   R+Q      T  +V      +HQ +  V+R   F EYSGA R RLQR     L+ PIPER+R  SG+  RQ  Y++VH  + +RR+QRR LR V
Subjt:  DRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTV

Query:  HRPVKRPSTLPWTL
        HR V+ P  LP TL
Subjt:  HRPVKRPSTLPWTL

TrEMBL top hitse value%identityAlignment
A0A059BKL2 Uncharacterized protein1.5e-1242.48Show/hide
Query:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH
        RI + R Q+  P+  VR+V R    +HQ++PGV+R        GA RRRLQR    AL+ P+ ER+R   G++  QV ++ V   I + RHQRR LR V 
Subjt:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH

Query:  RPVKRPSTLPWTL
          V+RP  LP  L
Subjt:  RPVKRPSTLPWTL

A0A0D9WNC7 Uncharacterized protein4.2e-1539.47Show/hide
Query:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR
        I++R +Q+ P +  VR+V  +G  +H+++PGV+R  +   +  A  R LQRC   +L+EP+ ER+   +G     V ++ VH H+  RRH+RR LR V R
Subjt:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR

Query:  PVKRPSTLPWTLGR
         V+RP  LP  L R
Subjt:  PVKRPSTLPWTLGR

A0A0P0WUF2 Os06g0220100 protein (Fragment)2.5e-1541.23Show/hide
Query:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR
        +++RR+++FP +  VR+V  +GG VHQ+  GV+R  +   ++ A RR LQR     L+EP+ ER+   +G     V ++ VH+H+    HQRR L TVHR
Subjt:  IKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVHR

Query:  PVKRPSTLPWTLGR
         V+RP  LP  L R
Subjt:  PVKRPSTLPWTLGR

A0A371E4F5 Uncharacterized protein (Fragment)9.3e-1544.74Show/hide
Query:  DRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTV
        DR+   R+Q      T  +V      +HQ +  V+R   F EYSGA R RLQR     L+ PIPER+R  SG+  RQ  Y++VH  + +RR+QRR LR V
Subjt:  DRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTV

Query:  HRPVKRPSTLPWTL
        HR V+ P  LP TL
Subjt:  HRPVKRPSTLPWTL

A0A5A7RDX8 50S ribosomal protein L161.8e-1343.48Show/hide
Query:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH
        R+  RR+QI PP+  VR+V  +   V Q +  VSR  + PE+  A R RLQR     L  P  E +R   G+  RQV ++ VHS++  RRHQRR LR VH
Subjt:  RIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILRTVH

Query:  RPVKRPSTLPWTLGR
        R V+RP      L R
Subjt:  RPVKRPSTLPWTLGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATATATTTCAAGATTTTGTACTTTTACCAATGATCGGATTAAACAACGCCGGAAGCAGATATTTCCGCCCATTGCCACCGTTCGCATTGTAACTCGCTCCGGTGG
CGCGGTCCACCAGAAGCTCCCCGGGGTATCCCGGAAAAGCTCCTTTCCCGAATATTCCGGTGCAGGCCGACGCCGCCTCCAGCGGTGCTTCCTTGGAGCCTTGATAGAAC
CCATTCCCGAACGGATTCGTCGCAGTTCCGGCAAGAAGACTCGCCAGGTTTATTATAATGCCGTCCATTCCCACATCCTTATTCGGCGGCACCAACGGCGGATTCTGAGG
ACCGTACACCGGCCGGTGAAACGGCCAAGCACACTGCCCTGGACATTGGGTCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATATATTTCAAGATTTTGTACTTTTACCAATGATCGGATTAAACAACGCCGGAAGCAGATATTTCCGCCCATTGCCACCGTTCGCATTGTAACTCGCTCCGGTGG
CGCGGTCCACCAGAAGCTCCCCGGGGTATCCCGGAAAAGCTCCTTTCCCGAATATTCCGGTGCAGGCCGACGCCGCCTCCAGCGGTGCTTCCTTGGAGCCTTGATAGAAC
CCATTCCCGAACGGATTCGTCGCAGTTCCGGCAAGAAGACTCGCCAGGTTTATTATAATGCCGTCCATTCCCACATCCTTATTCGGCGGCACCAACGGCGGATTCTGAGG
ACCGTACACCGGCCGGTGAAACGGCCAAGCACACTGCCCTGGACATTGGGTCGCTGA
Protein sequenceShow/hide protein sequence
MIYISRFCTFTNDRIKQRRKQIFPPIATVRIVTRSGGAVHQKLPGVSRKSSFPEYSGAGRRRLQRCFLGALIEPIPERIRRSSGKKTRQVYYNAVHSHILIRRHQRRILR
TVHRPVKRPSTLPWTLGR