; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G205880 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G205880
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionnuclear pore complex protein NUP54
Genome locationCiama_Chr11:5637750..5642213
RNA-Seq ExpressionCaUC11G205880
SyntenyCaUC11G205880
Gene Ontology termsGO:0006607 - NLS-bearing protein import into nucleus (biological process)
GO:0006999 - nuclear pore organization (biological process)
GO:0036228 - protein localization to nuclear inner membrane (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR024864 - Nucleoporin Nup54/Nup57/Nup44
IPR025712 - Nucleoporin Nup54, alpha-helical domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135312.1 nuclear pore complex protein NUP54 [Cucumis sativus]5.9e-20096.66Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFA GFGSSLFSTPFSSQPSQQQQQLQQSP+FPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPF A QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLT+TRGQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_008446043.1 PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo]4.5e-20097.43Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFA GFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAA QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELS+RVQNLLTITRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_022151739.1 nuclear pore complex protein NUP54 [Momordica charantia]1.5e-18792.29Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSS         AFGTPQSTPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPSTS+F  GFGSSLFSTPFSSQPSQQ QQ QQSPLF Q  AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAA QSTPFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKD+AGNPKYAFKHLLFSVTDPQ+RAKPAGVSDIMWAEAM KLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQRHFLADTLPWVQRL+QKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLT TRGQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEMTDDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_023515339.1 nuclear pore complex protein NUP54-like [Cucurbita pepo subsp. pepo]1.5e-18792.78Show/hide
Query:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG
        FG   S+ AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNL STPAFGTPSTSSFA GFGSSLFSTPFSSQP QQQQQ QQSPLF Q  ATG
Subjt:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG

Query:  FGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
        FGFQTPFAA QS+PFPNAQL TQMAPVAPLPF LADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSD MWAEAMAKLEGMESADRERLW
Subjt:  FGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW

Query:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ
        PQLVQGFKDLSQRLKIQDEVIL+D+ERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKL+LITRQ
Subjt:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ

Query:  LKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
         K SGAELSRRVQNLL ITRGQ NGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAED EMTDD S
Subjt:  LKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_038893426.1 nuclear pore complex protein NUP54 [Benincasa hispida]5.4e-20197.43Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFA GFGSSLFSTPFSSQPSQ QQQLQQSPLFPQ +AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAA QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KPAGVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDS+RLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLTITRGQANGS AGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAED+EMTDDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

TrEMBL top hitse value%identityAlignment
A0A0A0KPW8 Nup54 domain-containing protein2.9e-20096.66Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFA GFGSSLFSTPFSSQPSQQQQQLQQSP+FPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPF A QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLT+TRGQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A1S3BE47 nuclear pore complex protein NUP542.2e-20097.43Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFA GFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAA QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELS+RVQNLLTITRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A5A7SSX4 Nuclear pore complex protein NUP542.2e-20097.43Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFA GFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAA QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELS+RVQNLLTITRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A6J1DDY9 nuclear pore complex protein NUP547.3e-18892.29Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSS         AFGTPQSTPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPSTS+F  GFGSSLFSTPFSSQPSQQ QQ QQSPLF Q  AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFAA QSTPFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKD+AGNPKYAFKHLLFSVTDPQ+RAKPAGVSDIMWAEAM KLEGMESADRERL
Subjt:  GFGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQRHFLADTLPWVQRL+QKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLT TRGQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEMTDDAS
Subjt:  QLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A6J1G105 nuclear pore complex protein NUP546.9e-18690.98Show/hide
Query:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG
        FG   S+ AFGTPQSTPAFGTPQSTPAFGTP STPAFGTPSASPAFGN SSTPAFGTPS+SSFA GFGSSLFSTPFSSQPSQQQQ  QQSPLF   +ATG
Subjt:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG

Query:  FGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
        FGFQTPFAA QS+PFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
Subjt:  FGFQTPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW

Query:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ
        PQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCR+P+M GEAELAE+LALITRQ
Subjt:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ

Query:  LKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        L+GSGAELSRRV+NLLTIT GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEM DD S
Subjt:  LKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

SwissProt top hitse value%identityAlignment
P70582 Nuclear pore complex protein Nup548.5e-0827.45Show/hide
Query:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE
        PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +   ++  LQ++    T+  + + K+K   L  R L+V+   E
Subjt:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE

Query:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
             G    +   E +L  +L  I  +L  +  +   R+  L++  R Q N  GA  S   +    I    L ++++ L+QQ E ++ L +++K D+ D
Subjt:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEII
        ++++
Subjt:  MEII

Q7Z3B4 Nucleoporin p543.2e-0726.96Show/hide
Query:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE
        PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +   ++  LQ++    ++  + + K+K   L  R L+V+   E
Subjt:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE

Query:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
             G    +   E +L  +L  I  +L  +  +   R+  L++  R Q N  GA  S   +    I    L ++++ L+QQ E ++ L +++K D+ D
Subjt:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEII
        ++++
Subjt:  MEII

Q8BTS4 Nuclear pore complex protein Nup548.5e-0827.45Show/hide
Query:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE
        PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +   ++  LQ++    T+  + + K+K   L  R L+V+   E
Subjt:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE

Query:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
             G    +   E +L  +L  I  +L  +  +   R+  L++  R Q N  GA  S   +    I    L ++++ L+QQ E ++ L +++K D+ D
Subjt:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEII
        ++++
Subjt:  MEII

Q8GYF7 Nuclear pore complex protein NUP542.9e-14172.22Show/hide
Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAA-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPFAAT---
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF  T   
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAA-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPFAAT---

Query:  -QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLEGM+S +RERLWPQLVQGFKD
Subjt:  -QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD

Query:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS
        LSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELS
Subjt:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS

Query:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA
        RRVQ+L TI+R QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED EM  D+
Subjt:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA

Q9VDV3 Nuclear pore complex protein Nup589.1e-1038.82Show/hide
Query:  FGAQPSSSAFGTPQST----------PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTP-STSSFAAGFGSSLFSTPFSSQPSQQQQQLQQ
        FGA  ++ AFG P ST          PAFGT  +TPAFG PA+T AFG P+A+PAFG  ++TPAFG P +T +F A   +S F  P ++         Q 
Subjt:  FGAQPSSSAFGTPQST----------PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTP-STSSFAAGFGSSLFSTPFSSQPSQQQQQLQQ

Query:  SPLFPQSSATG-----FGFQTPFAATQSTPFPNAQL-TTQMAPVAPLPFSLA
        S     + A G     F F TP  +  +T  P     TT     A +P SL+
Subjt:  SPLFPQSSATG-----FGFQTPFAATQSTPFPNAQL-TTQMAPVAPLPFSLA

Arabidopsis top hitse value%identityAlignment
AT1G24310.1 unknown protein2.1e-14272.22Show/hide
Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAA-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPFAAT---
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF  T   
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAA-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPFAAT---

Query:  -QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLEGM+S +RERLWPQLVQGFKD
Subjt:  -QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD

Query:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS
        LSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELS
Subjt:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS

Query:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA
        RRVQ+L TI+R QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED EM  D+
Subjt:  RRVQNLLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGAGCTCAACCATCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCACAATCAACTCCGGCATTTGGCACGCCAGCGTCCACT
CCTGCCTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTTGGAACTCCATCTACGTCGTCGTTTGCCGCCGGCTTCGGCTCG
TCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCCCCGCTGTTTCCGCAATCATCCGCCACAGGATTCGGTTTCCAG
ACTCCGTTTGCAGCGACTCAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATT
CAAGCAATTGTTGAGGCTTACAAAGACGACGCAGGAAACCCTAAGTATGCTTTCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCT
GGTGTATCGGATATAATGTGGGCTGAGGCAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGACAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGAT
TTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCC
GATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGAGCAAGGGCTTCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGC
CGAATGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTGGCTTTGATAACGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAAC
TTGCTTACAATTACTCGTGGTCAAGCAAATGGCTCCGGTGCTGGTAACTCAATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAG
GAGGTTTTGCAGCAACAGACTGAGGCCATTGCTAGACTCGGAAATGTTTTAAAGCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACA
GATGATGCAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGAGCTCAACCATCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCACAATCAACTCCGGCATTTGGCACGCCAGCGTCCACT
CCTGCCTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTTGGAACTCCATCTACGTCGTCGTTTGCCGCCGGCTTCGGCTCG
TCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCCCCGCTGTTTCCGCAATCATCCGCCACAGGATTCGGTTTCCAG
ACTCCGTTTGCAGCGACTCAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATT
CAAGCAATTGTTGAGGCTTACAAAGACGACGCAGGAAACCCTAAGTATGCTTTCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCT
GGTGTATCGGATATAATGTGGGCTGAGGCAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGACAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGAT
TTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCC
GATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGAGCAAGGGCTTCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGC
CGAATGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTGGCTTTGATAACGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAAC
TTGCTTACAATTACTCGTGGTCAAGCAAATGGCTCCGGTGCTGGTAACTCAATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAG
GAGGTTTTGCAGCAACAGACTGAGGCCATTGCTAGACTCGGAAATGTTTTAAAGCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACA
GATGATGCAAGTTAA
Protein sequenceShow/hide protein sequence
MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAAGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQ
TPFAATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD
LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQN
LLTITRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS