CuGenDBv2

Gene ID	CaUC11G207940
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA ligase
Genome location	Ciama_Chr11:8880256..8881703
RNA-Seq Expression	CaUC11G207940
Synteny	CaUC11G207940
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006297 - nucleotide-excision repair, DNA gap filling (biological process) GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0006310 - DNA recombination (biological process) GO:0010165 - response to X-ray (biological process) GO:0051103 - DNA ligation involved in DNA repair (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0032807 - DNA ligase IV complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003910 - DNA ligase (ATP) activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR012310 - DNA ligase, ATP-dependent, central IPR016059 - DNA ligase, ATP-dependent, conserved site IPR029710 - DNA ligase 4

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8651679.1 hypothetical protein Csa_021363 [Cucumis sativus]

4.3e-39

96.34

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AGYPSWSIR YNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

XP_011648959.1 DNA ligase 4 isoform X1 [Cucumis sativus]

4.3e-39

96.34

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AGYPSWSIR YNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

XP_011648960.1 DNA ligase 4 isoform X2 [Cucumis sativus]

4.3e-39

96.34

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AGYPSWSIR YNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

XP_011648962.1 DNA ligase 4 isoform X3 [Cucumis sativus]

4.3e-39

96.34

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AGYPSWSIR YNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

XP_031736833.1 DNA ligase 4 isoform X4 [Cucumis sativus]

4.3e-39

96.34

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AGYPSWSIR YNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHC7 DNA ligase

2.1e-39

96.34

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AGYPSWSIR YNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

A0A6J1D6X8 DNA ligase

2.2e-36

90.24

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AG PSWS R YN DDVERFFK+TIENRDEGIVIKD+GSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

A0A6J1D7W8 DNA ligase

2.2e-36

90.24

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AG PSWS R YN DDVERFFK+TIENRDEGIVIKD+GSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

A0A6J1D962 DNA ligase

2.2e-36

90.24

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AG PSWS R YN DDVERFFK+TIENRDEGIVIKD+GSKWEPGDRSGKWLKLKPDYVRAGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

A0A6J1ENX2 DNA ligase

7.5e-37

91.46

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        AG PSWSIR YNVDDVERFFKSTIENRDEGIVIKDL SKWEPGDRSGKWLKLKPDY+ AGSDLD+LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

SwissProt top hits

e value

%identity

Alignment

Q4WVG8 DNA ligase 4

2.6e-10

42.86

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Query:  DDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYV-RAGSDLDSLIIGGYYGSGRRGGEVS
        D VE   +  +    EG+V+K+  S +   +R   W+K+KP+Y+   G  LD ++IGGYYGSGRRGG +S
Subjt:  DDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYV-RAGSDLDSLIIGGYYGSGRRGGEVS

Q54CR9 DNA ligase 4

6.1e-12

44.16

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Query:  NVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYV----RAGSDLDSLIIGGYYGSG--RRGGEVS
        ++  +    +S I NR+EG+++K+L S + P +R  KW+K+KP+Y+        DLD +IIGGYYGSG  RRGG +S
Subjt:  NVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYV----RAGSDLDSLIIGGYYGSG--RRGGEVS

Q7X7E9 Putative DNA ligase 4

4.0e-27

52.21

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Query:  PSWSIRTYNVDDVERFFKSTIEN----------------------------------RDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIG
        P WSI  +++DDVE+FFK T++N                                  R+EGI++KDL SKWEPGDRSGKWLKLKPDY+ AG+DLD +IIG
Subjt:  PSWSIRTYNVDDVERFFKSTIEN----------------------------------RDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIG

Query:  GYYGSGRRGGEVS
        GYYGSGRRGGEV+
Subjt:  GYYGSGRRGGEVS

Q90YB1 DNA ligase 4

1.5e-10

53.33

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Query:  IENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSD-LDSLIIGGYYGSGRRGGEVS
        I+NR+EGI++KD  S ++P  R   WLK+KP+YV    D LD LI+GGY+G G RGG +S
Subjt:  IENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSD-LDSLIIGGYYGSGRRGGEVS

Q9LL84 DNA ligase 4

1.7e-33

78.05

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        +G PSWSI  +   DVERFFK T+ENRDEGIV+KDL SKWEPGDRSGKW+KLKP+Y+RAG+DLD LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

Arabidopsis top hits

e value

%identity

Alignment

AT1G66730.1 DNA LIGASE 6

1.4e-06

38.81

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Query:  VERFFKSTIENRDEGIVIK--DLGSKWEPGDRSGKWLKLKPDYVRA-GSDLDSLIIGGYYGSGRRGG
        +  F +   ++  EGI++K  D+ + + P  RS  WLK+K DYV   G  LD + IG +YG+GR+ G
Subjt:  VERFFKSTIENRDEGIVIK--DLGSKWEPGDRSGKWLKLKPDYVRA-GSDLDSLIIGGYYGSGRRGG

AT5G57160.1 DNA ligase IV

1.2e-34

78.05

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Query:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS
        +G PSWSI  +   DVERFFK T+ENRDEGIV+KDL SKWEPGDRSGKW+KLKP+Y+RAG+DLD LIIGGYYGSGRRGGEV+
Subjt:  AGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVS

Sequences

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CDS sequence

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ATGAGCATTGTTCTGGTCTGGCAGCCTTTTGAGCCGTTATTCTTTATCATTCGGTCTGTTCTATGCTGTCATGCAGGGTATCCTTCTTGGTCAATTAGAACTTATAATGT
TGATGACGTGGAAAGGTTCTTTAAGAGTACCATTGAAAATAGAGATGAAGGTATTGTTATTAAGGACCTGGGTTCTAAATGGGAACCTGGTGATCGTAGTGGGAAGTGGT
TAAAATTAAAGCCTGACTATGTTCGTGCTGGATCTGATTTGGATTCCCTCATCATAGGAGGTTACTACGGCTCTGGACGGCGGGGTGGGGAGGTTAGCTTTTCTAGAGAA
TGA

mRNA sequence

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Protein sequence

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MSIVLVWQPFEPLFFIIRSVLCCHAGYPSWSIRTYNVDDVERFFKSTIENRDEGIVIKDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDSLIIGGYYGSGRRGGEVSFSRE

CaUC11G207940 (gene) of Watermelon (USVL246-FR2) v1 genome