; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G208040 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G208040
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionLINE-1 reverse transcriptase like
Genome locationCiama_Chr11:9248403..9269902
RNA-Seq ExpressionCaUC11G208040
SyntenyCaUC11G208040
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU51943.1 hypothetical protein TSUD_417260, partial [Trifolium subterraneum]6.5e-0933.06Show/hide
Query:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE
        + S  +S H PL L  +S  WG   F+F+N WL    F  ++ N+W      G  G+ +  +LK L    K WN  V  K +E+  ++ + I  +DL+ E
Subjt:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE

Query:  HSNISDEEINKCLALKHRLYD
           ISDEE+     ++ RL+D
Subjt:  HSNISDEEINKCLALKHRLYD

KAE8652282.1 hypothetical protein Csa_023980, partial [Cucumis sativus]3.8e-0931.13Show/hide
Query:  KISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNI
        ++ +H+P +LES++LKWGS  F+ +N +L +K F   + N W    + G  G+   R+LK LS   K W + +   +   +E+I   IN +D+ E    +
Subjt:  KISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNI

Query:  SDEEIN
        ++ + N
Subjt:  SDEEIN

MCH79408.1 LINE-1 reverse transcriptase like [Trifolium medium]6.5e-0932.23Show/hide
Query:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE
        + S  +S H P++L  +S  WG   F+F+N WL  K F  ++ N+W +    G  G+ +  +LK L    K+WN  V  + LE+  ++ + I  +DL+ E
Subjt:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE

Query:  HSNISDEEINKCLALKHRLYD
         + IS EE+      + RL+D
Subjt:  HSNISDEEINKCLALKHRLYD

MCH80388.1 endonuclease/exonuclease/phosphatase family protein [Trifolium medium]1.4e-0831.4Show/hide
Query:  LSVSLSSC---SLLALLSPLGLPIL--------------SHFDLTPVISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQK
        L VSL SC   +L+  +  + LP+L              S  D   V  E  N    S L + P     +S H PL+L S ++ WG   F+F+N WL  K
Subjt:  LSVSLSSC---SLLALLSPLGLPIL--------------SHFDLTPVISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQK

Query:  FFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNISDEE
         F  ++++SW     VG  G  +  KLK L    K+WN  V      ++ N+ + IN++D+  E   +S+EE
Subjt:  FFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNISDEE

RWR92932.1 hypothetical protein CKAN_02215900 [Cinnamomum micranthum f. kanehirae]1.7e-0930.94Show/hide
Query:  VISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDL
        ++S+  +  FP  + ++      IS H P+ L SNS+ WG   F+F+N WL  K F ++ ++ W  +   G SG+ + RKL+ L    K WN  V  +  
Subjt:  VISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDL

Query:  EQMENITKSINDIDLEEEHSNISDEEINKCLALKHRLYD
        E  E  ++ ++DID E E  ++  EEI        +++D
Subjt:  EQMENITKSINDIDLEEEHSNISDEEINKCLALKHRLYD

TrEMBL top hitse value%identityAlignment
A0A2Z6PAA1 Uncharacterized protein (Fragment)3.1e-0933.06Show/hide
Query:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE
        + S  +S H PL L  +S  WG   F+F+N WL    F  ++ N+W      G  G+ +  +LK L    K WN  V  K +E+  ++ + I  +DL+ E
Subjt:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE

Query:  HSNISDEEINKCLALKHRLYD
           ISDEE+     ++ RL+D
Subjt:  HSNISDEEINKCLALKHRLYD

A0A392LWT8 LINE-1 reverse transcriptase like3.1e-0932.23Show/hide
Query:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE
        + S  +S H P++L  +S  WG   F+F+N WL  K F  ++ N+W +    G  G+ +  +LK L    K+WN  V  + LE+  ++ + I  +DL+ E
Subjt:  LTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEE

Query:  HSNISDEEINKCLALKHRLYD
         + IS EE+      + RL+D
Subjt:  HSNISDEEINKCLALKHRLYD

A0A392M080 Endonuclease/exonuclease/phosphatase family protein (Fragment)7.0e-0931.4Show/hide
Query:  LSVSLSSC---SLLALLSPLGLPIL--------------SHFDLTPVISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQK
        L VSL SC   +L+  +  + LP+L              S  D   V  E  N    S L + P     +S H PL+L S ++ WG   F+F+N WL  K
Subjt:  LSVSLSSC---SLLALLSPLGLPIL--------------SHFDLTPVISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQK

Query:  FFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNISDEE
         F  ++++SW     VG  G  +  KLK L    K+WN  V      ++ N+ + IN++D+  E   +S+EE
Subjt:  FFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNISDEE

A0A392M2U2 Endo/exonuclease/phosphatase domain-containing protein9.2e-0933.98Show/hide
Query:  ISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNIS
        +S H PL+L+ ++L WG   F+F+N WL  K    V+  SW++    G  GH + +KLK L    K+WN  V      ++  +   IN+++L++E S+++
Subjt:  ISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNIS

Query:  DEE
        +EE
Subjt:  DEE

A0A3S3R1F6 Uncharacterized protein8.3e-1030.94Show/hide
Query:  VISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDL
        ++S+  +  FP  + ++      IS H P+ L SNS+ WG   F+F+N WL  K F ++ ++ W  +   G SG+ + RKL+ L    K WN  V  +  
Subjt:  VISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGHTIMRKLKSLSPQCKMWNIRVLKKDL

Query:  EQMENITKSINDIDLEEEHSNISDEEINKCLALKHRLYD
        E  E  ++ ++DID E E  ++  EEI        +++D
Subjt:  EQMENITKSINDIDLEEEHSNISDEEINKCLALKHRLYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGTTTTATTTCTTTGATTTTGAGAGATCTGCTGCGCCGCATCTCCCTCACTCTCAGTTTCCCTCTCCTCTCGCTGGACTGCCTCCCTCACTCCCGTCTCAGACC
TCCCTCGACTGCCTCCCTCACTCTCAGTCTCAGACCTCGCCAACGCCCTCCCTCTCCTCTCGCTCTCCTCTCGCCTCTCGGTCTCCATCTCCTCCCGGTCTCCCTCCCCT
CTCGGTCTTCCTCTCCTCTCGCTGGACTGCCTCCCTCACCCCCATTCTCAGACCTCCCTCGACTGCCTCCCTCACTCTCAGTCTCAGACGTCGTCGACGCCCTCCCTCTC
CTCTCGCTCTCCTCTCGCCTCTCGGTCTCCCTCTCCTCTTGCTCTCTTCTCGCTCTCCTCTCGCCTCTCGGTCTCCCTATCCTCTCACACTTCGATCTGACGCCAGTTAT
ATCAGAAAGACAGAACTCCGACTTTCCCTCTCCTCTCGGTCTCTCTCCTCTCACTTCTCATAAAATTTCATACCACTATCCATTACTCCTAGAATCAAACAGCTTGAAAT
GGGGATCTTGCACCTTCAAATTTGACAACAGATGGCTATCTCAAAAATTCTTTGATTTGGTCATACAAAATTCATGGGCCACCCTTAGGGAAGTCGGACAATCGGGACAT
ACTATCATGAGGAAGCTAAAAAGTTTATCACCTCAGTGCAAAATGTGGAACATTAGAGTATTAAAAAAAGATCTTGAACAGATGGAAAACATTACCAAGAGTATAAATGA
TATTGATCTGGAAGAAGAACATAGTAACATTTCTGACGAAGAGATCAACAAATGTCTGGCTTTAAAGCATCGATTATATGACGCCACTATTATGAACAACGTTGTTGATG
TGGATAATAAGTTCGTTACCCCTCAATGCGTCTTTGCCCCAATCGGTGCGTTTGATGTAGACAGGACAACGAAACCATGGAACACCTTTTCTTCCAACGTTCTTTTTCTA
CCTCCATCTGGTCATACTTCAACAATGGTGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGGTTTTATTTCTTTGATTTTGAGAGATCTGCTGCGCCGCATCTCCCTCACTCTCAGTTTCCCTCTCCTCTCGCTGGACTGCCTCCCTCACTCCCGTCTCAGACC
TCCCTCGACTGCCTCCCTCACTCTCAGTCTCAGACCTCGCCAACGCCCTCCCTCTCCTCTCGCTCTCCTCTCGCCTCTCGGTCTCCATCTCCTCCCGGTCTCCCTCCCCT
CTCGGTCTTCCTCTCCTCTCGCTGGACTGCCTCCCTCACCCCCATTCTCAGACCTCCCTCGACTGCCTCCCTCACTCTCAGTCTCAGACGTCGTCGACGCCCTCCCTCTC
CTCTCGCTCTCCTCTCGCCTCTCGGTCTCCCTCTCCTCTTGCTCTCTTCTCGCTCTCCTCTCGCCTCTCGGTCTCCCTATCCTCTCACACTTCGATCTGACGCCAGTTAT
ATCAGAAAGACAGAACTCCGACTTTCCCTCTCCTCTCGGTCTCTCTCCTCTCACTTCTCATAAAATTTCATACCACTATCCATTACTCCTAGAATCAAACAGCTTGAAAT
GGGGATCTTGCACCTTCAAATTTGACAACAGATGGCTATCTCAAAAATTCTTTGATTTGGTCATACAAAATTCATGGGCCACCCTTAGGGAAGTCGGACAATCGGGACAT
ACTATCATGAGGAAGCTAAAAAGTTTATCACCTCAGTGCAAAATGTGGAACATTAGAGTATTAAAAAAAGATCTTGAACAGATGGAAAACATTACCAAGAGTATAAATGA
TATTGATCTGGAAGAAGAACATAGTAACATTTCTGACGAAGAGATCAACAAATGTCTGGCTTTAAAGCATCGATTATATGACGCCACTATTATGAACAACGTTGTTGATG
TGGATAATAAGTTCGTTACCCCTCAATGCGTCTTTGCCCCAATCGGTGCGTTTGATGTAGACAGGACAACGAAACCATGGAACACCTTTTCTTCCAACGTTCTTTTTCTA
CCTCCATCTGGTCATACTTCAACAATGGTGGGTTGA
Protein sequenceShow/hide protein sequence
MTGFISLILRDLLRRISLTLSFPLLSLDCLPHSRLRPPSTASLTLSLRPRQRPPSPLALLSPLGLHLLPVSLPSRSSSPLAGLPPSPPFSDLPRLPPSLSVSDVVDALPL
LSLSSRLSVSLSSCSLLALLSPLGLPILSHFDLTPVISERQNSDFPSPLGLSPLTSHKISYHYPLLLESNSLKWGSCTFKFDNRWLSQKFFDLVIQNSWATLREVGQSGH
TIMRKLKSLSPQCKMWNIRVLKKDLEQMENITKSINDIDLEEEHSNISDEEINKCLALKHRLYDATIMNNVVDVDNKFVTPQCVFAPIGAFDVDRTTKPWNTFSSNVLFL
PPSGHTSTMVG