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CaUC11G209030 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G209030
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptiontranscription factor bHLH3
Genome locationCiama_Chr11:12865423..12865740
RNA-Seq ExpressionCaUC11G209030
SyntenyCaUC11G209030
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010629 - negative regulation of gene expression (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR045084 - Transcription factor AIB/MYC-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606391.1 Transcription factor MTB3, partial [Cucurbita argyrosperma subsp. sororia]9.9e-2569.23Show/hide
Query:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VES+VGSEACEFL+ +ASSNI   D LQ SL D +VNQGL+++LDGSSWNYA FW VVSLKS ALALIWGD N  D KI I I GGD
Subjt:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
XP_008461882.1 PREDICTED: transcription factor bHLH3 [Cucumis melo]7.1e-3179.12Show/hide
Query:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VESIVGSEACEFLI LAS NI P DSLQFSL DS+VNQGLSQ+L+GSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS GD
Subjt:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
XP_011651443.1 transcription factor bHLH3 [Cucumis sativus]7.8e-3080.68Show/hide
Query:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VESIVGSEACEFLI LAS NI P DSLQFSL DS+VNQGLSQ+LDGSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS  D
Subjt:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
XP_022995744.1 transcription factor bHLH3-like [Cucurbita maxima]5.8e-2570.33Show/hide
Query:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VES+VGSEACEFL+ LASSNI   D LQ SL D +VNQGL+++LDGSSWNYA FW VVSLKS ALALIWGD N  D KI I I GGD
Subjt:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
XP_038888141.1 transcription factor bHLH3 [Benincasa hispida]3.7e-3280.22Show/hide
Query:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VES+VGSEACEFLI LAS+NI P DSLQFSL DS+VNQGLSQ+LDGSSWNYA FW VVSLKS ALALIWGD N  +SKIEIGISGGD
Subjt:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
TrEMBL top hitse value%identityAlignment
A0A0A0L7H2 Uncharacterized protein3.8e-3080.68Show/hide
Query:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VESIVGSEACEFLI LAS NI P DSLQFSL DS+VNQGLSQ+LDGSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS  D
Subjt:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
A0A1S3CG81 transcription factor bHLH33.4e-3179.12Show/hide
Query:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VESIVGSEACEFLI LAS NI P DSLQFSL DS+VNQGLSQ+L+GSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS GD
Subjt:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
A0A6J1HH34 transcription factor bHLH3-like1.1e-2469.32Show/hide
Query:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VES++GSEACEFLI LASSNI PP++ QF    S+VNQGL+Q+LDGS+WNYA FW VV+LKS  LALIWGD    DSKI I ISGGD
Subjt:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
A0A6J1HKJ4 transcription factor bHLH3-like isoform X21.1e-2469.32Show/hide
Query:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VES++GSEACEFLI LASSNI PP++ QF    S+VNQGL+Q+LDGS+WNYA FW VV+LKS  LALIWGD    DSKI I ISGGD
Subjt:  IVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
A0A6J1K6T2 transcription factor bHLH3-like2.8e-2570.33Show/hide
Query:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VES+VGSEACEFL+ LASSNI   D LQ SL D +VNQGL+++LDGSSWNYA FW VVSLKS ALALIWGD N  D KI I I GGD
Subjt:  KKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
SwissProt top hitse value%identityAlignment
A0A3Q7H216 Transcription factor MTB31.6e-0940.23Show/hide
Query:  VESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +E ++GSEA EF    AS+++        S  D  V Q L +I++GS W YA +W V   KS   ALIWGD + R++KI  G    D
Subjt:  VESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
O23487 Transcription factor bHLH31.3e-1141.3Show/hide
Query:  KGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH
        + +VES +GSEAC+F I  AS++      L     DS + QGL  +++GS W+YA FWL  ++ S     LIWGD + R  K   G SG D+
Subjt:  KGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH
Arabidopsis top hitse value%identityAlignment
AT4G16430.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein9.3e-1341.3Show/hide
Query:  KGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH
        + +VES +GSEAC+F I  AS++      L     DS + QGL  +++GS W+YA FWL  ++ S     LIWGD + R  K   G SG D+
Subjt:  KGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAAAAGGAATAGTGGAATCAATTGTTGGTAGTGAAGCTTGTGAGTTCTTGATTTTGTTGGCATCCAGCAATATCTTCCCACCGGATTCCTTGCAATTTTCTCT
TTGTGATTCGACTGTGAATCAGGGGTTAAGCCAAATTTTGGACGGTTCAAGTTGGAATTATGCATTCTTTTGGCTTGTGGTTAGCTTGAAATCTAGGGCTTTAGCTTTGA
TTTGGGGTGATAGGAACTATCGTGATTCAAAGATTGAGATTGGAATTTCTGGTGGGGATCATGTGGATAATTTGGTCAAGACAAATTTTCTTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAAAAGGAATAGTGGAATCAATTGTTGGTAGTGAAGCTTGTGAGTTCTTGATTTTGTTGGCATCCAGCAATATCTTCCCACCGGATTCCTTGCAATTTTCTCT
TTGTGATTCGACTGTGAATCAGGGGTTAAGCCAAATTTTGGACGGTTCAAGTTGGAATTATGCATTCTTTTGGCTTGTGGTTAGCTTGAAATCTAGGGCTTTAGCTTTGA
TTTGGGGTGATAGGAACTATCGTGATTCAAAGATTGAGATTGGAATTTCTGGTGGGGATCATGTGGATAATTTGGTCAAGACAAATTTTCTTAAATAA
Protein sequenceShow/hide protein sequence
MNKKGIVESIVGSEACEFLILLASSNIFPPDSLQFSLCDSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGDHVDNLVKTNFLK