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CaUC11G209060 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G209060
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationCiama_Chr11:12996748..12998628
RNA-Seq ExpressionCaUC11G209060
SyntenyCaUC11G209060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032636.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.4e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R  QEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SENKKM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

KAA0057113.1 putative gag protein [Cucumis melo var. makuwa]2.6e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R LQEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SEN+KM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.4e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R  QEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SENKKM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]3.4e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R  QEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SENKKM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

XP_022158402.1 uncharacterized protein LOC111024891 [Momordica charantia]8.8e-1348.33Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQTLCNLEEEKEFMKIEIAELSSKFHHLVE-------------QDTEAYLEWERKIEHVFDCNTN
        +EMM EDRQE R QQ+REER LQEDEGM D +  + +          F  I       + H   +              D EAYL+WERKIEHVFD  T 
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQTLCNLEEEKEFMKIEIAELSSKFHHLVE-------------QDTEAYLEWERKIEHVFDCNTN

Query:  SENKKMRLVIAKFTNHAENW
        SENKKMRLVIA+F NHA  W
Subjt:  SENKKMRLVIAKFTNHAENW

TrEMBL top hitse value%identityAlignment
A0A5A7UMH2 Putative gag protein1.2e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R LQEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SEN+KM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

A0A5A7VLF9 CCHC-type domain-containing protein1.6e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R  QEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SENKKM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

A0A5D3C3D3 F15O4.131.6e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R  QEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SENKKM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

A0A5D3DRJ1 F15O4.131.6e-1242.96Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK
        +E+M E+RQE R QQQRE R  QEDEGM DL     Q              L N+          E+    +K++I   +         D+E YL+WERK
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQ-------------TLCNL----------EEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERK

Query:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR
        IEHVFDCNT SENKKM+L IA+FTN+A  W  +++
Subjt:  IEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWVR

A0A6J1DX52 uncharacterized protein LOC1110248914.3e-1348.33Show/hide
Query:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQTLCNLEEEKEFMKIEIAELSSKFHHLVE-------------QDTEAYLEWERKIEHVFDCNTN
        +EMM EDRQE R QQ+REER LQEDEGM D +  + +          F  I       + H   +              D EAYL+WERKIEHVFD  T 
Subjt:  MEMMSEDRQE-RTQQQREERALQEDEGMLDLEEIILQTLCNLEEEKEFMKIEIAELSSKFHHLVE-------------QDTEAYLEWERKIEHVFDCNTN

Query:  SENKKMRLVIAKFTNHAENW
        SENKKMRLVIA+F NHA  W
Subjt:  SENKKMRLVIAKFTNHAENW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGATGAGCGAAGATAGACAAGAAAGGACACAACAACAAAGAGAAGAACGAGCCTTACAAGAAGATGAAGGAATGCTTGATCTAGAAGAAATAATCTTGCAAAC
CTTATGCAATCTAGAAGAGGAGAAAGAATTCATGAAGATAGAGATAGCAGAGTTAAGCTCAAAATTTCACCATTTAGTGGAACAAGACACGGAGGCATACTTAGAATGGG
AAAGGAAGATAGAACACGTGTTTGATTGCAACACAAATAGTGAGAATAAGAAGATGAGACTTGTCATTGCCAAATTCACCAACCATGCAGAAAACTGGCGTATGTGGGTG
CGCGTGTGCGTATGTGTGTGCGCGTGTGGGTGGGTTGGTGTGTGTGTGTGGGCATGTGTGTGCTACATGGAAGAAGATTACACTGTAGATATATTCCTTAGGAGAAAAAG
TGTTAGAAGAAGTGTTCTTCAAAGAATGGGAGCACTGGGCAAGGTCAAAGGCCTTCTTGCAACTGTCATCAAACACAAAGGACACATCTTTCTGGAAGAGGGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGATGAGCGAAGATAGACAAGAAAGGACACAACAACAAAGAGAAGAACGAGCCTTACAAGAAGATGAAGGAATGCTTGATCTAGAAGAAATAATCTTGCAAAC
CTTATGCAATCTAGAAGAGGAGAAAGAATTCATGAAGATAGAGATAGCAGAGTTAAGCTCAAAATTTCACCATTTAGTGGAACAAGACACGGAGGCATACTTAGAATGGG
AAAGGAAGATAGAACACGTGTTTGATTGCAACACAAATAGTGAGAATAAGAAGATGAGACTTGTCATTGCCAAATTCACCAACCATGCAGAAAACTGGCGTATGTGGGTG
CGCGTGTGCGTATGTGTGTGCGCGTGTGGGTGGGTTGGTGTGTGTGTGTGGGCATGTGTGTGCTACATGGAAGAAGATTACACTGTAGATATATTCCTTAGGAGAAAAAG
TGTTAGAAGAAGTGTTCTTCAAAGAATGGGAGCACTGGGCAAGGTCAAAGGCCTTCTTGCAACTGTCATCAAACACAAAGGACACATCTTTCTGGAAGAGGGAGAGTAA
Protein sequenceShow/hide protein sequence
MEMMSEDRQERTQQQREERALQEDEGMLDLEEIILQTLCNLEEEKEFMKIEIAELSSKFHHLVEQDTEAYLEWERKIEHVFDCNTNSENKKMRLVIAKFTNHAENWRMWV
RVCVCVCACGWVGVCVWACVCYMEEDYTVDIFLRRKSVRRSVLQRMGALGKVKGLLATVIKHKGHIFLEEGE