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CaUC11G209080 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G209080
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCiama_Chr11:13077534..13082727
RNA-Seq ExpressionCaUC11G209080
SyntenyCaUC11G209080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX93836.1 hypothetical protein L195_g016998, partial [Trifolium pratense]2.0e-0742.65Show/hide
Query:  KTLRDYFRLVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        +TLRDYF         I + P   NNFE KPGLIQM  +  FRGS  +DP  H+  F+ +  ++K  G
Subjt:  KTLRDYFRLVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]3.9e-1944.35Show/hide
Query:  FEVIFGW-----------IDPTFRQNLRRNLKPVFDSMTQKLE--PKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRH
        F  +FGW           +DP   +  RRNL+ + +  T+  E  PK +RDYF+  +P +Q GI + P +VNNFE KPGLIQMA + AFRG + +DP++H
Subjt:  FEVIFGW-----------IDPTFRQNLRRNLKPVFDSMTQKLE--PKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRH

Query:  IHFFLEICSTIKIKG
        +  FLEIC T+K+ G
Subjt:  IHFFLEICSTIKIKG

XP_017431963.1 PREDICTED: uncharacterized protein LOC108339335 [Vigna angularis]1.5e-0739.13Show/hide
Query:  RQNLRRNLKPVFDSMTQKLEP--KTLRDYFRLVPTAQLG-ITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        R+  +R ++   ++ T   EP  KTLRDY    P +  G I   P   NNFE KP L+Q+     F G++ +DP  H+  FL IC T+KI G
Subjt:  RQNLRRNLKPVFDSMTQKLEP--KTLRDYFRLVPTAQLG-ITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

XP_018815692.2 uncharacterized protein LOC108987258 [Juglans regia]9.1e-0847.89Show/hide
Query:  EPKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        +P TL+DY R +V     GI     + NNFE KP LI M     F GS + DP  H+  FLEIC T+KIKG
Subjt:  EPKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

XP_023881727.1 uncharacterized protein LOC111994101 [Quercus suber]4.1e-0844.59Show/hide
Query:  QKLEPKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        Q  +P+TL+DY R +V     GI     + NNFE KP LI M     F GS + DP  H+  FLEIC T+K+ G
Subjt:  QKLEPKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

TrEMBL top hitse value%identityAlignment
A0A1B5Z9T0 Retrotrans_gag domain-containing protein (Fragment)2.0e-0539.13Show/hide
Query:  KTLRDYFRLVPTAQLGITHAPFDVNNFEFKPGLIQMA-GDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        +TLRDY          I + P   NNFE KPGLIQM      FRG+  +DP  H+  F+ +  ++K  G
Subjt:  KTLRDYFRLVPTAQLGITHAPFDVNNFEFKPGLIQMA-GDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

A0A1S3UKD4 uncharacterized protein LOC1067662671.4e-0641.03Show/hide
Query:  SMTQKLEP-KTLRDYFRLVPTAQLG-ITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        +MT++  P KT+RDY    P    G I   P   NNFE KP L+Q+     F G+  +DP  H+  FL IC T+K  G
Subjt:  SMTQKLEP-KTLRDYFRLVPTAQLG-ITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

A0A2I4E8H0 uncharacterized protein LOC1089872584.4e-0847.89Show/hide
Query:  EPKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        +P TL+DY R +V     GI     + NNFE KP LI M     F GS + DP  H+  FLEIC T+KIKG
Subjt:  EPKTLRDYFR-LVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

A0A2K3MSV7 Uncharacterized protein (Fragment)9.8e-0842.65Show/hide
Query:  KTLRDYFRLVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        +TLRDYF         I + P   NNFE KPGLIQM  +  FRGS  +DP  H+  F+ +  ++K  G
Subjt:  KTLRDYFRLVPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

A0A6P6W382 uncharacterized protein LOC1137297691.6e-0541.46Show/hide
Query:  FDSMTQKLEP--KTLRDYFRLVPT--AQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG
        F+    + EP  + LRD F L  T  +Q  I     + NNFE KP LIQM     + G++ +DP  H+  FLEIC TIK  G
Subjt:  FDSMTQKLEP--KTLRDYFRLVPT--AQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTGGGGGCGTGAGAGGTGTCGCTGGTGTGCAGAGGGTGGCGCTACGTGTGTGCAGAGACTGCCGCCCACGTGGGGTAGTGTGTGCGAGGTAGTGACTAGGCATGC
GGGTAGAGTGCTGTACGAGGTTTGCCGCTCATTTGAGGTTATTTTCGGCTGGATAGACCCTACTTTCAGGCAAAATCTAAGGAGGAATTTAAAACCCGTGTTTGATTCCA
TGACTCAAAAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACTAGTTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAA
CCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCACATACACTTCTTTTTGGAGATTTGCAGCACAATAAAGATAAA
AGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTGGGGGCGTGAGAGGTGTCGCTGGTGTGCAGAGGGTGGCGCTACGTGTGTGCAGAGACTGCCGCCCACGTGGGGTAGTGTGTGCGAGGTAGTGACTAGGCATGC
GGGTAGAGTGCTGTACGAGGTTTGCCGCTCATTTGAGGTTATTTTCGGCTGGATAGACCCTACTTTCAGGCAAAATCTAAGGAGGAATTTAAAACCCGTGTTTGATTCCA
TGACTCAAAAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACTAGTTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAA
CCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCACATACACTTCTTTTTGGAGATTTGCAGCACAATAAAGATAAA
AGGGTGA
Protein sequenceShow/hide protein sequence
MLWGRERCRWCAEGGATCVQRLPPTWGSVCEVVTRHAGRVLYEVCRSFEVIFGWIDPTFRQNLRRNLKPVFDSMTQKLEPKTLRDYFRLVPTAQLGITHAPFDVNNFEFK
PGLIQMAGDYAFRGSSVKDPYRHIHFFLEICSTIKIKG