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CaUC11G210080 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G210080
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibosomal protein S4
Genome locationCiama_Chr11:20365299..20366650
RNA-Seq ExpressionCaUC11G210080
SyntenyCaUC11G210080
Gene Ontology termsGO:0045903 - positive regulation of translational fidelity (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR022801 - Ribosomal protein S4/S9


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QDH82098.1 ribosomal protein S4 [Broussonetia monoica]5.7e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
QDH82148.1 ribosomal protein S4 [Broussonetia kurzii]5.7e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
QJE38180.1 ribosomal protein S4, partial [Cannabis sativa]5.7e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
WP_131796643.1 hypothetical protein [Candidatus Frankia datiscae]5.7e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
YP_002608399.1 ribosomal protein S4 [Vitis vinifera]5.7e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
TrEMBL top hitse value%identityAlignment
A0A0M4RG21 Ribosomal protein S42.8e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
A0A7D6BZG8 Ribosomal protein S42.8e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
B6VJZ4 Ribosomal protein S42.8e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
B9TAA4 Mitochondrial ribosomal protein S4, putative2.8e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
E9P2C0 Ribosomal protein S42.8e-1998.08Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
SwissProt top hitse value%identityAlignment
Q31708 Ribosomal protein S4, mitochondrial2.2e-2196.15Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRR+KTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
Arabidopsis top hitse value%identityAlignment
AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein1.5e-2296.15Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRR+KTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
ATMG00290.1 mitochondrial ribosomal protein S41.5e-2296.15Show/hide
Query:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC
        MWRR+KTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEK C
Subjt:  MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKAC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGAAGAACTAAAACAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAGTTGCGTTCTTCTATGCAAGA
AGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGCATGTCCAACAGCCCTACAACGCACTCATCTAGCCTACCCAGCCTCAATGTGCGGCAAACCATGCACAG
GAACGCTGCCTTGCACTCACAGACACTGCCCGCACACACTGCCATTCATGGGTAGCAATCCCCGCACACACATTGTAGAAATAACCACAAAAGAGGCAAGGCGTGCGCGT
CTTCCACTATGCCCACGTCGTCAGCTTGTGTCGTGTGTCTCAGCAAGACTAGTGAGACTTATCTCGCTTAACTCCTGCAAGCACGTTGCGTCAGCCGTGCTCACCAACGA
GACTTGTCTCGCCACCACAACCTGCACATCCACAACAGCATATCTCGCTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGAAGAACTAAAACAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAGTTGCGTTCTTCTATGCAAGA
AGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGCATGTCCAACAGCCCTACAACGCACTCATCTAGCCTACCCAGCCTCAATGTGCGGCAAACCATGCACAG
GAACGCTGCCTTGCACTCACAGACACTGCCCGCACACACTGCCATTCATGGGTAGCAATCCCCGCACACACATTGTAGAAATAACCACAAAAGAGGCAAGGCGTGCGCGT
CTTCCACTATGCCCACGTCGTCAGCTTGTGTCGTGTGTCTCAGCAAGACTAGTGAGACTTATCTCGCTTAACTCCTGCAAGCACGTTGCGTCAGCCGTGCTCACCAACGA
GACTTGTCTCGCCACCACAACCTGCACATCCACAACAGCATATCTCGCTCATTAG
Protein sequenceShow/hide protein sequence
MWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKACPTALQRTHLAYPASMCGKPCTGTLPCTHRHCPHTLPFMGSNPRTHIVEITTKEARRAR
LPLCPRRQLVSCVSARLVRLISLNSCKHVASAVLTNETCLATTTCTSTTAYLAH