; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G210340 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G210340
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal protein L18-like
Genome locationCiama_Chr11:21403147..21407174
RNA-Seq ExpressionCaUC11G210340
SyntenyCaUC11G210340
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441144.1 PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]3.5e-3997.73Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDE+IEGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

XP_022152485.1 uncharacterized protein LOC111020202 [Momordica charantia]4.6e-3996.59Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDER+EGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

XP_022990182.1 uncharacterized protein LOC111487153 [Cucurbita maxima]3.5e-3997.73Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

XP_022993255.1 uncharacterized protein LOC111489327 [Cucurbita maxima]4.6e-3996.59Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

XP_023521951.1 uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]3.5e-3997.73Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

TrEMBL top hitse value%identityAlignment
A0A1S3B2Q8 50S ribosomal protein L18-like1.7e-3997.73Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDE+IEGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

A0A6J1DE20 uncharacterized protein LOC1110202022.2e-3996.59Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDER+EGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

A0A6J1FFK7 uncharacterized protein LOC1114452795.0e-3995.45Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERI+GK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

A0A6J1JHY7 uncharacterized protein LOC1114871531.7e-3997.73Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

A0A6J1JY30 uncharacterized protein LOC1114893272.2e-3996.59Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGK+GIVIDTIKENGIMFVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

SwissProt top hitse value%identityAlignment
A9BG02 50S ribosomal protein L181.6e-0527.78Show/hide
Query:  KKVSRGGCEATKQEIMETKDRYKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDT
        +K  RG  E  +  + +++   K I+A+++       ++ A+T  K L+  L    D NA + +GKLIAE++KE  +  I ++ R   +  GK+  + + 
Subjt:  KKVSRGGCEATKQEIMETKDRYKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDT

Query:  IKENGIMF
         +E G+ F
Subjt:  IKENGIMF

Q3BWW7 50S ribosomal protein L183.5e-0533.33Show/hide
Query:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF
        ++A+V     SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A +  ++++ R   R  G+I  + D  +E G+ F
Subjt:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF

Q4URF5 50S ribosomal protein L185.9e-0533.33Show/hide
Query:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF
        ++A+V     SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A +  ++++ R   R  G+I  + D  +E G+ F
Subjt:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF

Q5P316 50S ribosomal protein L181.8e-0634.52Show/hide
Query:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF
        I+A+V+    S+V++ A+T   D+R+ LP+  +  A +V+GKLIAER+K A V A++++ R   +  G++  + +  +E G+ F
Subjt:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF

Q8PNR1 50S ribosomal protein L183.5e-0533.33Show/hide
Query:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF
        ++A+V     SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A +  ++++ R   R  G+I  + D  +E G+ F
Subjt:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMF

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein2.9e-1545.24Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI
        +F+ A + HR T + ++VA TN+KD++  L S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGKI  V+ ++ +NGI
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI

AT1G08845.2 Ribosomal L18p/L5e family protein2.9e-1545.24Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI
        +F+ A + HR T + ++VA TN+KD++  L S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGKI  V+ ++ +NGI
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI

AT3G20230.1 Ribosomal L18p/L5e family protein1.1e-3581.82Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP
        KFIHAKVMHR TSKVISVATTNA+D+R ++PSL D+ ACR+IGKLIAERS EADVYA+SYEPRK ERIEGK+GIVIDTIKE+GI+FVP
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP

AT3G22450.1 Ribosomal L18p/L5e family protein1.0e-1240.24Show/hide
Query:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI
        + A V+HR TSKV++VA + +KD++  L S  +  AC  +G ++A+RS E D++ + Y PRK ++IEGK+ +V+  + +NG+
Subjt:  IHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI

AT5G27820.1 Ribosomal L18p/L5e family protein8.2e-1035.71Show/hide
Query:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI
        KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGK++ ER    D+ A++ + +K++R  GK+  VID+++E G+
Subjt:  KFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGC
TGTGGTTTTCTGCCGTGGAGATGAGGGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGG
GTGGAGAGGGAGTGGGAGAGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGATGTTGCAGCCAATGGTGAAGGAGACTTGTGGGAGAGTCAATGGTAAGATGTTTGTC
CTTTGGGTACCACGCTCCGTGAACCATGTGCCGGCCAAGGGATTTCACCATGTTTTTCGTCTTGTAGTCAACGCGTCATGGAAGTTGAGAGCAATTGCACGGGAGAATTT
CATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCAT
GGACTAATCCTTGTGTACAACAAAGGCATCATTTTGCCAAAGACGTGTATGCATTACACCAAGTGATAACAGACGACCACGTGTCAGAAAAAACCAGCATGTTTACACTT
GTAGGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATAAATTTATCCATGC
GAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAA
TAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACC
ATTAAGGAGAACGGGATCATGTTTGTACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGC
TGTGGTTTTCTGCCGTGGAGATGAGGGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGG
GTGGAGAGGGAGTGGGAGAGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGATGTTGCAGCCAATGGTGAAGGAGACTTGTGGGAGAGTCAATGGTAAGATGTTTGTC
CTTTGGGTACCACGCTCCGTGAACCATGTGCCGGCCAAGGGATTTCACCATGTTTTTCGTCTTGTAGTCAACGCGTCATGGAAGTTGAGAGCAATTGCACGGGAGAATTT
CATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCAT
GGACTAATCCTTGTGTACAACAAAGGCATCATTTTGCCAAAGACGTGTATGCATTACACCAAGTGATAACAGACGACCACGTGTCAGAAAAAACCAGCATGTTTACACTT
GTAGGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATAAATTTATCCATGC
GAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAA
TAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACC
ATTAAGGAGAACGGGATCATGTTTGTACCTTGA
Protein sequenceShow/hide protein sequence
MAGLWRLVVKKKEGKGSLDAGAGELLDSDGRDDEDEAVVFCRGDEGGGGVGGLTKGEVWLSGGLKVEEGKELLGGEGVGEKKGCCLWKGEMMLQPMVKETCGRVNGKMFV
LWVPRSVNHVPAKGFHHVFRLVVNASWKLRAIARENFILFPLGNSVYKCCSNGGVKGDPRTGKIASILCAVCPWTNPCVQQRHHFAKDVYALHQVITDDHVSEKTSMFTL
VGFIYTISLDKKVSRGGCEATKQEIMETKDRYKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDT
IKENGIMFVP