CuGenDBv2

Gene ID	CaUC11G210700
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Mitochondrial transcription termination factor family protein isoform 2
Genome location	Ciama_Chr11:22664931..22673973
RNA-Seq Expression	CaUC11G210700
Synteny	CaUC11G210700
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009536 - plastid (cellular component) GO:0016020 - membrane (cellular component) GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domains	IPR003690 - Transcription termination factor, mitochondrial/chloroplastic IPR038538 - MTERF superfamily, mitochondrial/chloroplastic

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037010.1 Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa]

3.3e-122

88.12

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS
        DKMLGKAFGHIHSPYWGEDRKK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPKSYNGSQS
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS

Query:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSAGRNAVATTAASSTSTQTYLLSEHFTTSP
         VEYSQKIGA GLIAMG EASIARASLVVAVSAGR+AV  TAAS TST TYLLSEHF  SP
Subjt:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSAGRNAVATTAASSTSTQTYLLSEHFTTSP

XP_004138649.1 uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]

6.8e-91

87.56

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPIST+DSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PRKWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDR+K++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

XP_008441218.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]

8.6e-94

89.12

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

XP_011649898.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]

6.8e-91

87.56

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPIST+DSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PRKWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDR+K++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

XP_038885056.1 uncharacterized protein LOC120075592 [Benincasa hispida]

5.0e-94

91.19

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSLVSPIST+DSATR CCSTR IATAISDA  SNVSF+YHPAKHMIKDVRRQTP P KWEI STTQVESLTLSDEDRKTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAF HIHSPYWGEDRKKE+PNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQN8 Uncharacterized protein

3.3e-91

87.56

Show/hide

Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPIST+DSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PRKWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDR+K++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

A0A1S3B2X0 uncharacterized protein LOC103485418

4.1e-94

89.12

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

A0A5A7T0X2 Mitochondrial transcription termination factor family protein isoform 2

1.6e-122

88.12

Show/hide

Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPIST+DSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS
        DKMLGKAFGHIHSPYWGEDRKK++PNI+IVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPKSYNGSQS
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS

Query:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSAGRNAVATTAASSTSTQTYLLSEHFTTSP
         VEYSQKIGA GLIAMG EASIARASLVVAVSAGR+AV  TAAS TST TYLLSEHF  SP
Subjt:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSAGRNAVATTAASSTSTQTYLLSEHFTTSP

A0A6J1FK31 uncharacterized protein LOC111444935

5.2e-89

86.53

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSLVSPISTVDS TRLC ST CI TA S+AVCSNVSF+Y PAK+MI DVRRQ+P PRKWEI ST QVESL LSDED+KTWE CRQALS+FSFS EEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKKE+PNI  VNEILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLL+KEWGIQGK LR+LLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

A0A6J1JTP6 uncharacterized protein LOC111489650

5.2e-89

86.53

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSLVSPISTVDS TRLC ST CI TA S AVCSNVSF+Y PAK+MI DVRRQ+P PRKWEI ST+QVESL LSD+D+KTWE CRQALS+FSFS EEQ
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKKE+PNI  VNEILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLL+KEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G09620.1 Mitochondrial transcription termination factor family protein

1.7e-47

51.55

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Query:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEI-RSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEE
        M+G SL SP++T+ SA     S   + T  ++ +   ++ +YH        VR  + +  KW +  STTQVE+   S+ED   WE C++ALS F FSVEE
Subjt:  MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEI-RSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEE

Query:  QDKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        +DK+LGKAFGHIHSPYW E+R KE P ++ +N+ILE+LR+LGLS++DL K++KKFPE LGC+LE+E+K N+ +L+ +WGI GK LRNLLLRNPK
Subjt:  QDKMLGKAFGHIHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTAGGAAAATCATTGGTGTCTCCCATATCAACCGTTGATTCTGCTACTCGTCTCTGTTGTTCTACTCGCTGCATTGCCACAGCCATATCAGATGCTGTATGTTCAAA
TGTAAGTTTCACCTATCATCCTGCTAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCAATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGCTTGA
CATTAAGTGACGAGGATAGGAAGACATGGGAAACTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAACAAGATAAGATGCTTGGAAAGGCATTCGGCCAC
ATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAATTCCTAATATTCAAATTGTAAATGAAATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCT
TTCTAAGCTGCTCAAAAAATTCCCAGAAGCTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTATTGGACAAAGAGTGGGGAATTCAAGGCAAACCAC
TAAGGAATCTTCTTCTGCGTAATCCCAAGAGCTATAATGGGTCTCAATCTAAGGTTGAATATTCCCAAAAGATAGGGGCATTTGGGCTTATTGCCATGGGTCTTGAGGCG
AGCATAGCAAGGGCAAGCTTGGTGGTTGCCGTAAGTGCCGGGCGGAACGCAGTGGCAACGACTGCAGCAAGTTCCACAAGCACGCAAACATATCTTCTTTCTGAACACTT
TACTACATCTCCTTGA

mRNA sequence

Show/hide mRNA sequence

GGTGAAGGCAAACCCAAAGATGGGTTATGTGGCTTTAGGCTGCAAGCAAAGGACAAGAAGATTGCTGTCTCATTTCTCAGCGTGAGCCAACCTGTGGTTGCGCATCTTCC
TAATTCTCGCATTGGCTGACCCTTCTTCTTCAACCTCCGCTGCACAACCACAACTCTATACGCTTTTCATCTTCAATCCCTCAAATCTCAGGGATGCTAGGAAAATCATT
GGTGTCTCCCATATCAACCGTTGATTCTGCTACTCGTCTCTGTTGTTCTACTCGCTGCATTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTAAGTTTCACCTATC
ATCCTGCTAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCAATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGCTTGACATTAAGTGACGAGGAT
AGGAAGACATGGGAAACTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAACAAGATAAGATGCTTGGAAAGGCATTCGGCCACATTCATTCACCCTACTG
GGGTGAAGACAGAAAGAAGGAAATTCCTAATATTCAAATTGTAAATGAAATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTTTCTAAGCTGCTCAAAA
AATTCCCAGAAGCTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTATTGGACAAAGAGTGGGGAATTCAAGGCAAACCACTAAGGAATCTTCTTCTG
CGTAATCCCAAGAGCTATAATGGGTCTCAATCTAAGGTTGAATATTCCCAAAAGATAGGGGCATTTGGGCTTATTGCCATGGGTCTTGAGGCGAGCATAGCAAGGGCAAG
CTTGGTGGTTGCCGTAAGTGCCGGGCGGAACGCAGTGGCAACGACTGCAGCAAGTTCCACAAGCACGCAAACATATCTTCTTTCTGAACACTTTACTACATCTCCTTGA

Protein sequence

Show/hide protein sequence

MLGKSLVSPISTVDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGH
IHSPYWGEDRKKEIPNIQIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQSKVEYSQKIGAFGLIAMGLEA
SIARASLVVAVSAGRNAVATTAASSTSTQTYLLSEHFTTSP

CaUC11G210700 (gene) of Watermelon (USVL246-FR2) v1 genome