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CaUC11G210760 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G210760
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCiama_Chr11:22778580..22782095
RNA-Seq ExpressionCaUC11G210760
SyntenyCaUC11G210760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022139699.1 uncharacterized protein LOC111010547 [Momordica charantia]1.6e-2053.33Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+LGALKYF+GLE+  TN G+ + + KY +D+L RFGM   KPC TP++++S  D+  S CS ED + YR ++G+LHY+TFTR DI F+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

XP_022143489.1 uncharacterized protein LOC111013365 [Momordica charantia]4.7e-2052.22Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+L  LKYF+GLE+  TN G+S++Q KY +D+L RFG+   KPC TP++++S  D+  + CS+ED + YR ++G+LHY+TFTR DIAF+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

XP_022151604.1 uncharacterized protein LOC111019517 [Momordica charantia]1.1e-1956.67Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+LG L++F+GLE+  ++ GISV Q+KY KD+L RFGM   KPC+TPIA++S +  ++S+CS  DAK YR +VGALHY+TF+R +IAF+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

XP_022154318.1 uncharacterized protein LOC111021613 [Momordica charantia]2.0e-1856.67Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+LG L+YF+GLEV  +++GI V Q KYA+D+L RFGM   KPC+T IA+ + +DV  S C++EDA  Y  +VGAL Y+TF+R DIAFS
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

XP_022157475.1 uncharacterized protein LOC111024167 [Momordica charantia]6.9e-1953.33Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT++ +LKYF+GLE+  T  G+ V Q+KY KD+LHRFGM+  K C+TP+A+ S  D S  +CS +D++ YR + GALHY+TF+R DIAF+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

TrEMBL top hitse value%identityAlignment
A0A6J1CDR7 uncharacterized protein LOC1110105477.9e-2153.33Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+LGALKYF+GLE+  TN G+ + + KY +D+L RFGM   KPC TP++++S  D+  S CS ED + YR ++G+LHY+TFTR DI F+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

A0A6J1CPG5 uncharacterized protein LOC1110133652.3e-2052.22Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+L  LKYF+GLE+  TN G+S++Q KY +D+L RFG+   KPC TP++++S  D+  + CS+ED + YR ++G+LHY+TFTR DIAF+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

A0A6J1DDJ2 uncharacterized protein LOC1110195175.1e-2056.67Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+LG L++F+GLE+  ++ GISV Q+KY KD+L RFGM   KPC+TPIA++S +  ++S+CS  DAK YR +VGALHY+TF+R +IAF+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

A0A6J1DK06 uncharacterized protein LOC1110216139.7e-1956.67Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT+LG L+YF+GLEV  +++GI V Q KYA+D+L RFGM   KPC+T IA+ + +DV  S C++EDA  Y  +VGAL Y+TF+R DIAFS
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

A0A6J1DT77 uncharacterized protein LOC1110241673.3e-1953.33Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS
        MT++ +LKYF+GLE+  T  G+ V Q+KY KD+LHRFGM+  K C+TP+A+ S  D S  +CS +D++ YR + GALHY+TF+R DIAF+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFS

SwissProt top hitse value%identityAlignment
P04146 Copia protein7.6e-0533.71Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKA-YREIVGALHYITF-TRADI
        MT+L  +K+FIG+ +      I ++Q+ Y K IL +F M +C   +TP+      ++ NS    ED     R ++G L YI   TR D+
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKA-YREIVGALHYITF-TRADI

P92519 Uncharacterized mitochondrial protein AtMg008101.2e-1340.22Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD
        M +LG + YF+G+++     G+ ++QTKYA+ IL+  GM DCKP +TP+ +   + VS +     D   +R IVGAL Y+T TR DI+++ +
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-0836.05Show/hide
Query:  LKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD
        L YF+G+E  +   G+ ++Q +Y  D+L R  M   KP  TP+A +    + +    L D   YR IVG+L Y+ FTR DI+++ +
Subjt:  LKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.5e-0837.21Show/hide
Query:  LKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD
        L YF+G+E  +   G+ ++Q +Y  D+L R  M   KP  TP+A  S     +S   L D   YR IVG+L Y+ FTR D++++ +
Subjt:  LKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.4e-1441.3Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD
        + +LG LKYF+GLE+ ++  GI++ Q KYA D+L   G+  CKP + P+   S    ++S     DAKAYR ++G L Y+  TR DI+F+ +
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD

ATMG00810.1 DNA/RNA polymerases superfamily protein8.4e-1540.22Show/hide
Query:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD
        M +LG + YF+G+++     G+ ++QTKYA+ IL+  GM DCKP +TP+ +   + VS +     D   +R IVGAL Y+T TR DI+++ +
Subjt:  MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAATCTAGGAGCTCTTAAATATTTTATAGGGCTTGAAGTTATCAAGACTAATGTTGGTATTTCTGTGACTCAAACTAAGTATGCTAAAGACATCTTACATCGTTT
TGGTATGAGCGACTGCAAACCATGTAATACTCCTATTGCAATCAACTCTTTCAATGATGTTTCTAACTCTGTTTGTTCTCTTGAGGATGCTAAGGCCTATAGAGAAATTG
TTGGAGCACTCCATTATATTACTTTCACAAGAGCAGATATTGCATTTTCTGCGGACGGACGCCGGGATGCTGGAACCGCCTTACTCGTAAACTCAGAGACTCTTCAGAAC
TTCCGAGAAGAAGATCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAATCTAGGAGCTCTTAAATATTTTATAGGGCTTGAAGTTATCAAGACTAATGTTGGTATTTCTGTGACTCAAACTAAGTATGCTAAAGACATCTTACATCGTTT
TGGTATGAGCGACTGCAAACCATGTAATACTCCTATTGCAATCAACTCTTTCAATGATGTTTCTAACTCTGTTTGTTCTCTTGAGGATGCTAAGGCCTATAGAGAAATTG
TTGGAGCACTCCATTATATTACTTTCACAAGAGCAGATATTGCATTTTCTGCGGACGGACGCCGGGATGCTGGAACCGCCTTACTCGTAAACTCAGAGACTCTTCAGAAC
TTCCGAGAAGAAGATCCCTAA
Protein sequenceShow/hide protein sequence
MTNLGALKYFIGLEVIKTNVGISVTQTKYAKDILHRFGMSDCKPCNTPIAINSFNDVSNSVCSLEDAKAYREIVGALHYITFTRADIAFSADGRRDAGTALLVNSETLQN
FREEDP