; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G211060 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G211060
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal protein-like protein
Genome locationCiama_Chr11:23337104..23337586
RNA-Seq ExpressionCaUC11G211060
SyntenyCaUC11G211060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022939119.1 uncharacterized protein LOC111445119 [Cucurbita moschata]2.8e-7190.62Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAVAG PT SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQDNS DPQDVDD DDD+ NMIPEKN+KEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+ LLT ANTSAAGIG+PS TRRSLRPISATFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

XP_022993370.1 uncharacterized protein LOC111489414 [Cucurbita maxima]7.4e-7291.25Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAVAG PT SPTASPV HLRRRRRKTLRMLLNRTDRRRFPYQDNS DPQDVDD DDD+ NMIPEKN+KEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+ LLT ANTSAAGIG+PS TRRSLRPISATFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

XP_023546418.1 uncharacterized protein LOC111805523 [Cucurbita pepo subsp. pepo]3.1e-7091.25Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAV GSPT SPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD S DPQDVDD DDD+ NMIPEKN+KEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+GLLTA N SAAGIG+ STTRRSLRPIS TFRYRFLRRAWRPVLVAIPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

XP_023551541.1 uncharacterized protein LOC111809331 [Cucurbita pepo subsp. pepo]8.2e-7190Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAVAG PT SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQDNS DPQDVDD DDD+ NMIPEKN+KEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+ LLT ANT AAGIG+PS TRRSLRPISATFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

XP_038885993.1 uncharacterized protein LOC120076298 [Benincasa hispida]1.9e-7293.12Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAVAGSPT SP ASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNS D QDVDD DDD+  MIPEKNEKEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEE++G LTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

TrEMBL top hitse value%identityAlignment
A0A6J1BYN1 uncharacterized protein LOC1110064611.7e-6991.25Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQC VAGSPT SPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNS DPQDVDD +DD  NMIPEKNEKEVRARRKLKDLFVSSPP +
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+GLLTA+NTSAAGIG+ STTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

A0A6J1FG66 uncharacterized protein LOC1114451191.4e-7190.62Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAVAG PT SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQDNS DPQDVDD DDD+ NMIPEKN+KEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+ LLT ANTSAAGIG+PS TRRSLRPISATFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

A0A6J1H7N8 uncharacterized protein LOC1114609054.4e-7090.62Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAV GSPT SPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD S DPQDVDD DDD+ NMIPEKN+KEV+ARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+GLLTA N SAAGIG+ STTRRSLRPIS TFRYRFLRRAWRPVLVAIPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

A0A6J1JSX9 uncharacterized protein LOC1114875513.3e-7091.25Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAV GSPT SPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD S DPQDVDD DDD+ NMIPEKN+KEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        D VSDRRIEEQ+GLLTA NTSAAGIG+ STTRRSLRPIS TFRYRFLRRAWRPVLVAIPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

A0A6J1JYC4 uncharacterized protein LOC1114894143.6e-7291.25Show/hide
Query:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAVAG PT SPTASPV HLRRRRRKTLRMLLNRTDRRRFPYQDNS DPQDVDD DDD+ NMIPEKN+KEVRARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQ+ LLT ANTSAAGIG+PS TRRSLRPISATFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown2.4e-2043.35Show/hide
Query:  TLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE-
        +L KFKLLA+ C+       SPT SPVIHL  RRRKTLR+LL R +DR R P   N+ D     D               ++R+ RKL DLFVSSPP E 
Subjt:  TLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLE-

Query:  -------DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRR-----SLRPISA-TFRYRFLRRAWRPVLVAIPE
               DK +   +E +  +     ++ AG G   T RR     S+RP+S+ T R R LRR+WRPVLV IPE
Subjt:  -------DKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRR-----SLRPISA-TFRYRFLRRAWRPVLVAIPE

AT1G68430.1 unknown protein4.2e-0936.09Show/hide
Query:  MATLHKFKLLASQCAVAG-SPT--PSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSP
        MATL +FK L +QC VA  SPT  PSP  SP++ L RR++ TL+MLL+     R        + Q +  H           + K+V A RKLKDLFVSS 
Subjt:  MATLHKFKLLASQCAVAG-SPT--PSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSP

Query:  PLEDKVSD------RRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE
          E++  +      +  EE    + A   +A+ +   S       P+   F  R L+RAWRP L  I E
Subjt:  PLEDKVSD------RRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE

AT5G16200.1 50S ribosomal protein-related1.8e-1539.29Show/hide
Query:  MATLHKFKLLAS----QCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVS
        ++ LHKFKL A+    + + AGSPT SPT SPV +L  RRRKTLRML ++ +D RR   +      Q +++  + + N   +K       RRKL++L V+
Subjt:  MATLHKFKLLAS----QCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVS

Query:  --SPPLEDKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISA-TFRYRFLRRAWRPVLVAIPE
          SPP + +     I E+   ++  N ++ G G   T RR     S  +FR R LR+ WRPVLV+IPE
Subjt:  --SPPLEDKVSDRRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISA-TFRYRFLRRAWRPVLVAIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTTTGCATAAATTCAAGCTCTTAGCCTCTCAATGTGCCGTCGCTGGTAGCCCTACTCCAAGCCCCACTGCTAGTCCCGTCATTCACCTCCGCCGCCGC
CGCCGCAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGCCGCCGATTTCCCTATCAAGATAACTCCACTGATCCTCAAGATGTCGACGACCACGACGACGAT
AACCACAATATGATTCCGGAGAAAAACGAGAAGGAAGTCCGAGCCAGACGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCGCTCGAGGATAAGGTTTCCGAT
AGGAGAATCGAAGAACAGGATGGATTGTTAACGGCGGCTAACACCAGCGCCGCTGGAATCGGTTCGCCATCTACCACTCGCCGCTCTCTTAGACCAATCTCGGCC
ACATTTCGGTACAGATTTCTCCGGCGAGCTTGGCGGCCGGTGCTCGTTGCCATTCCCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTTTGCATAAATTCAAGCTCTTAGCCTCTCAATGTGCCGTCGCTGGTAGCCCTACTCCAAGCCCCACTGCTAGTCCCGTCATTCACCTCCGCCGCCGC
CGCCGCAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGCCGCCGATTTCCCTATCAAGATAACTCCACTGATCCTCAAGATGTCGACGACCACGACGACGAT
AACCACAATATGATTCCGGAGAAAAACGAGAAGGAAGTCCGAGCCAGACGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCGCTCGAGGATAAGGTTTCCGAT
AGGAGAATCGAAGAACAGGATGGATTGTTAACGGCGGCTAACACCAGCGCCGCTGGAATCGGTTCGCCATCTACCACTCGCCGCTCTCTTAGACCAATCTCGGCC
ACATTTCGGTACAGATTTCTCCGGCGAGCTTGGCGGCCGGTGCTCGTTGCCATTCCCGAGTAG
Protein sequenceShow/hide protein sequence
MATLHKFKLLASQCAVAGSPTPSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSTDPQDVDDHDDDNHNMIPEKNEKEVRARRKLKDLFVSSPPLEDKVSD
RRIEEQDGLLTAANTSAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE