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CaUC11G211770 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G211770
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCiama_Chr11:24529701..24540999
RNA-Seq ExpressionCaUC11G211770
SyntenyCaUC11G211770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.6e-2452.9Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+NE              AKISPDH+RLIKVLM LRP+YE V  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA +QEIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

KAA0036615.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-2452.17Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+N              +AKISPDH+RLIKVL+ LRPKYESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA ++EIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.5e-2453.62Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+NE              AKISPDH+RLIKVLM LRP+YESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA +QEIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

TYK03354.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-2452.17Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+N              +AKISPDH+RLIKVL+ LRPKYESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA ++EIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]8.6e-2553.62Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+NE              AKISPDH+RLIKVLM LRP+YESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA +QEIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882004.2e-2553.62Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+NE              AKISPDH+RLIKVLM LRP+YESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA +QEIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-2452.9Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+NE              AKISPDH+RLIKVLM LRP+YE V  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA +QEIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

A0A5A7T587 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-2452.17Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+N              +AKISPDH+RLIKVL+ LRPKYESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA ++EIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

A0A5D3BW47 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-2452.17Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+N              +AKISPDH+RLIKVL+ LRPKYESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLN--------------EAKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA ++EIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-947.1e-2553.62Show/hide
Query:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC
        TSI   HT       A  LWDFL+T F+ IGLAHYYQLHSTL+  +Q++ QS+NE              AKISPDH+RLIKVLM LRP+YESV  ALLH 
Subjt:  TSINGCHT----MSVALSLWDFLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNE--------------AKISPDHLRLIKVLMRLRPKYESVCVALLHC

Query:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL
        NPLPSLDA +QEIL + + R G      SD+ + T  L
Subjt:  NPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACCCTCGAGTTCACAAGAAGCAATAATATGATTGATAATCATGAGTCGAAACAGTGTTTTTCAAGCCAACCCTCTTCCTGCCCACTACCACCAACATCG
CTACTCTGGCCGCATCAGTCGTCATTCACAACTTATCATTCCTTCACCGATAGCTGCTTAGGTCTGGTCGATTTGCGCTCTCCTCAGTTTAGATCTGGCCGATTC
CCAGACCCACGTTATAGATCTACTAGCTCTTGCCTGGCTAACCGTCACTTCGCTACTTCTATCAACGGCTGCCACACGATGTCCGTGGCTCTGAGTTTATGGGAT
TTCTTGTTTACACACTTTAAATTTATCGGACTGGCTCATTATTATCAATTGCATAGTACTCTTATTTGTCACCATCAAAAAATCGATCAATCGCTAAACGAAGCC
AAAATCAGTCCAGATCATCTCCGACTTATTAAGGTCCTTATGAGACTTCGTCCTAAATATGAATCTGTTTGTGTTGCCTTACTACACTGCAACCCTTTACCGTCA
TTGGATGCAACAATTCAAGAAATCTTGCGCAAATGGCGGCTTAGATCTGGAAAATGCGGTGACTTTGACTCAGATCTGGAAATGGAGACGGCGTGGTTGACTAGT
CGTGGACGTGGACTTATCATGGTCGACTACTTCACTGGTCGTGGAGGTGGAGACGTGGACTCAGATCTGGAATGCCGGTGGCGGTGTCGTCTGGAATCTTCGATG
TCGTCTGGGACTCTGGCATGTGGAATGCCGGTGACGGTGTCGTCTCACGTCTGCAACGTCGGCGTTGTCTGGGCATACGAACCGTTTGGTTCAGCTGAAGAGTCA
AGTTTTTGCCGCTCAACAACTCTTGTACCGAACCGTGAAGATGTATCCAAGGTCCGATCAACTTTATCTCCTTCATTCTCCATTTGTTGCATCAGCCTATCAGCA
ACAACACAGACTTCAATCTGCTTCCTTCGCTCATCAAACATTTTGGTTGCTTTCTTGATTTCGTTTGCCCTTTCAATTGGAACCTCCTCACTCTTACCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATACCCTCGAGTTCACAAGAAGCAATAATATGATTGATAATCATGAGTCGAAACAGTGTTTTTCAAGCCAACCCTCTTCCTGCCCACTACCACCAACATCG
CTACTCTGGCCGCATCAGTCGTCATTCACAACTTATCATTCCTTCACCGATAGCTGCTTAGGTCTGGTCGATTTGCGCTCTCCTCAGTTTAGATCTGGCCGATTC
CCAGACCCACGTTATAGATCTACTAGCTCTTGCCTGGCTAACCGTCACTTCGCTACTTCTATCAACGGCTGCCACACGATGTCCGTGGCTCTGAGTTTATGGGAT
TTCTTGTTTACACACTTTAAATTTATCGGACTGGCTCATTATTATCAATTGCATAGTACTCTTATTTGTCACCATCAAAAAATCGATCAATCGCTAAACGAAGCC
AAAATCAGTCCAGATCATCTCCGACTTATTAAGGTCCTTATGAGACTTCGTCCTAAATATGAATCTGTTTGTGTTGCCTTACTACACTGCAACCCTTTACCGTCA
TTGGATGCAACAATTCAAGAAATCTTGCGCAAATGGCGGCTTAGATCTGGAAAATGCGGTGACTTTGACTCAGATCTGGAAATGGAGACGGCGTGGTTGACTAGT
CGTGGACGTGGACTTATCATGGTCGACTACTTCACTGGTCGTGGAGGTGGAGACGTGGACTCAGATCTGGAATGCCGGTGGCGGTGTCGTCTGGAATCTTCGATG
TCGTCTGGGACTCTGGCATGTGGAATGCCGGTGACGGTGTCGTCTCACGTCTGCAACGTCGGCGTTGTCTGGGCATACGAACCGTTTGGTTCAGCTGAAGAGTCA
AGTTTTTGCCGCTCAACAACTCTTGTACCGAACCGTGAAGATGTATCCAAGGTCCGATCAACTTTATCTCCTTCATTCTCCATTTGTTGCATCAGCCTATCAGCA
ACAACACAGACTTCAATCTGCTTCCTTCGCTCATCAAACATTTTGGTTGCTTTCTTGATTTCGTTTGCCCTTTCAATTGGAACCTCCTCACTCTTACCTTAG
Protein sequenceShow/hide protein sequence
MNTLEFTRSNNMIDNHESKQCFSSQPSSCPLPPTSLLWPHQSSFTTYHSFTDSCLGLVDLRSPQFRSGRFPDPRYRSTSSCLANRHFATSINGCHTMSVALSLWD
FLFTHFKFIGLAHYYQLHSTLICHHQKIDQSLNEAKISPDHLRLIKVLMRLRPKYESVCVALLHCNPLPSLDATIQEILRKWRLRSGKCGDFDSDLEMETAWLTS
RGRGLIMVDYFTGRGGGDVDSDLECRWRCRLESSMSSGTLACGMPVTVSSHVCNVGVVWAYEPFGSAEESSFCRSTTLVPNREDVSKVRSTLSPSFSICCISLSA
TTQTSICFLRSSNILVAFLISFALSIGTSSLLP