CuGenDBv2

Gene ID	CaUC11G213980
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Mediator of RNA polymerase II transcription subunit 32
Genome location	Ciama_Chr11:27225057..27228786
RNA-Seq Expression	CaUC11G213980
Synteny	CaUC11G213980
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009631 - cold acclimation (biological process) GO:0010150 - leaf senescence (biological process) GO:0048364 - root development (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR033244 - Mediator of RNA polymerase II transcription subunit 32

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045925.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

3.6e-69

95.33

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Query:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP
        +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPP
Subjt:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

TYK13665.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

1.0e-68

94.67

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Query:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP
        +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPP
Subjt:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_008457936.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]

1.5e-67

95.89

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Query:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV
        MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_022986620.1 mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita maxima]

1.2e-67

94.74

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Query:  VLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLP
        V DMD LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ  ATTTGLP
Subjt:  VLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLP

Query:  PISAVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ
        PISA+RLEQMSKAVRWLVIELQHGSG AAASASAHSHPSAPFDARFTEDATQ
Subjt:  PISAVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ

XP_038902813.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida]

2.3e-68

96.58

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Query:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV
        MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQA TTG+PPISAV
Subjt:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIN7 Uncharacterized protein

7.3e-68

95.89

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Query:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV
        MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAV
Subjt:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A1S3C6T6 mediator of RNA polymerase II transcription subunit 32

7.3e-68

95.89

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Query:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV
        MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 32

1.7e-69

95.33

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Query:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP
        +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPP
Subjt:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 32

5.1e-69

94.67

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Query:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP
        +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPP
Subjt:  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A6J1JEJ1 mediator of RNA polymerase II transcription subunit 32-like isoform X1

5.6e-68

94.74

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Query:  VLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLP
        V DMD LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVESVKQRIGSECLVDEATGSLAGKSGQ  ATTTGLP
Subjt:  VLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLP

Query:  PISAVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ
        PISA+RLEQMSKAVRWLVIELQHGSG AAASASAHSHPSAPFDARFTEDATQ
Subjt:  PISAVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ

SwissProt top hits

e value

%identity

Alignment

Q84VW5 Mediator of RNA polymerase II transcription subunit 32

4.9e-45

67.32

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Query:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----
        MD +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVESVKQRIGSECLVDEATG   + AG    A  TG    
Subjt:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.5e-46

67.32

Show/hide

Query:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----
        MD +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVESVKQRIGSECLVDEATG   + AG    A  TG    
Subjt:  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Sequences

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CDS sequence

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ATGGTTTTATCCTCTTCCTCTGCCCCGGCAACAATTGGTTGCGTTAACAACAACTTCAAGGCTAAGTTCCCAAAGAAAGATTTTAATCTTCCTAAGCATCTTGCCAAATC
ACTGTCCCTTTGTTTTTCTGTCTTGGTACTTGATATGGACAGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAA
ATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTG
GAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGC
TGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTT
TTGATGCTAGATTTACTGAGGATGCAACCCAGTTTCACTACGTTTCTTCTAGTCATTTCAAACAAGAGATCAGATATTTGATTCTTCTGAGTTGGACTCCATTCTTGTAA

mRNA sequence

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Protein sequence

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MVLSSSSAPATIGCVNNNFKAKFPKKDFNLPKHLAKSLSLCFSVLVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFV
ESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQFHYVSSSHFKQEIRYLILLSWTPFL

CaUC11G213980 (gene) of Watermelon (USVL246-FR2) v1 genome