; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G214460 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G214460
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSusC/RagA family TonB-linked outer membrane protein
Genome locationCiama_Chr11:27829040..27833631
RNA-Seq ExpressionCaUC11G214460
SyntenyCaUC11G214460
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB8093250.1 hypothetical protein EE612_019994 [Oryza sativa]4.0e-2056.95Show/hide
Query:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT
        PG GATKT  R L    GVSASGGSS+SSRS PPSS   S  S SS    + PF   S ++T   SSSPQS P+A+SSSSSSA   P  SSPPS IP +T
Subjt:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM
        L +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM

KAB8093252.1 hypothetical protein EE612_019996 [Oryza sativa]5.8e-1956.29Show/hide
Query:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTTSS--SSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT
        PG GATKT  R L   FGVSASG SS+SSRS PPSS   S  S SS    + PF   S ++T S  SSPQS P+A+SSSSSSA   P  SSPPS IP +T
Subjt:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTTSS--SSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM
          +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM

KAB8109720.1 hypothetical protein EE612_046128 [Oryza sativa]1.8e-2057.62Show/hide
Query:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT
        PG GATKT    L    GVSASGGSS+SSRS PPSS   S  S SS    + PF   S ++T   SSSPQS P+A+SSSSSSA   P  SSPPS IP +T
Subjt:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM
        L +GQSP  + G GG +R+ V PSG++G+ SPNSAASLSA S  PWV AV+
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM

KFK32902.1 hypothetical protein AALP_AA6G303100 [Arabis alpina]1.6e-2967.59Show/hide
Query:  GRPGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSF-PSAPSSSSKIAVTSPFCKPSTSTTSSSSPQSPSATSSSSSSARPAPTLSSPPSNIPFMT
        G P VG TKT+ R   +T GVS+SGGSSKSSR HPPSSSF  SA S+S K+A  S    PSTST  SSSPQSPS TSSSSS+A P   LSSPPSNIPF+T
Subjt:  GRPGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSF-PSAPSSSSKIAVTSPFCKPSTSTTSSSSPQSPSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKP
        LRSGQSPPHM G GG R D V PSGK+G  SP+S AS SA S KP
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKP

TQD77134.1 hypothetical protein C1H46_037338 [Malus baccata]1.1e-1270.77Show/hide
Query:  SNRIAVSKLPAAACSAARDDLCIQTWLAGRPGVGATKTELRELTDTFGVSASGGSSKSSRSHPPS
        + RIA+ K PAAACSAARDD   Q WL G PGVGAT TE R L   FGVS SGGSS+SSRSHPPS
Subjt:  SNRIAVSKLPAAACSAARDDLCIQTWLAGRPGVGATKTELRELTDTFGVSASGGSSKSSRSHPPS

TrEMBL top hitse value%identityAlignment
A0A087GSQ0 Uncharacterized protein7.8e-3067.59Show/hide
Query:  GRPGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSF-PSAPSSSSKIAVTSPFCKPSTSTTSSSSPQSPSATSSSSSSARPAPTLSSPPSNIPFMT
        G P VG TKT+ R   +T GVS+SGGSSKSSR HPPSSSF  SA S+S K+A  S    PSTST  SSSPQSPS TSSSSS+A P   LSSPPSNIPF+T
Subjt:  GRPGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSF-PSAPSSSSKIAVTSPFCKPSTSTTSSSSPQSPSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKP
        LRSGQSPPHM G GG R D V PSGK+G  SP+S AS SA S KP
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKP

A0A0P0W219 Os03g0711425 protein1.9e-2056.95Show/hide
Query:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT
        PG GATKT  R L    GVSASGGSS+SSRS PPSS   S  S SS    + PF   S ++T   SSSPQS P+A+SSSSSSA   P  SSPPS IP +T
Subjt:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM
        L +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM

A0A0P0W2R7 Os03g0711525 protein2.8e-1956.29Show/hide
Query:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTTSS--SSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT
        PG GATKT  R L   FGVSASG SS+SSRS PPSS   S  S SS    + PF   S ++T S  SSPQS P+A+SSSSSSA   P  SSPPS IP +T
Subjt:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTTSS--SSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM
          +GQSP  + G GG +R+   PSG++G+ SP+SAASLSA S  PWV AV+
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM

A0A0P0XIL4 Os09g0128101 protein8.7e-2157.62Show/hide
Query:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT
        PG GATKT    L    GVSASGGSS+SSRS PPSS   S  S SS    + PF   S ++T   SSSPQS P+A+SSSSSSA   P  SSPPS IP +T
Subjt:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTT--SSSSPQS-PSATSSSSSSARPAPTLSSPPSNIPFMT

Query:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM
        L +GQSP  + G GG +R+ V PSG++G+ SPNSAASLSA S  PWV AV+
Subjt:  LRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSCKPWVDAVM

A0A7C8ZNL2 Uncharacterized protein2.4e-2361.87Show/hide
Query:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTTSSSSPQSPSATSSSSSSARPAPTLSSPPSNIPFMTLRS
        P  G TKT+ R L +  GVS+S   S SSR HPPSSS  S PS SSK +  SPF   STS  SSSSPQSPS  SSSSS+A P PT+SSPPSNIPF+TL  
Subjt:  PGVGATKTELRELTDTFGVSASGGSSKSSRSHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTTSSSSPQSPSATSSSSSSARPAPTLSSPPSNIPFMTLRS

Query:  GQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATS
        GQSPPH+TG GG RR    P GK+G  SP+SAA  SA S
Subjt:  GQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTTGCTCCAGTTTCTTTTACCTTCCACAAGGAGACGTGAAGACGTGAATACTCAACAACAAAGCTCCTGTTCTTCAGAAGATAATCTCAAGAAGTCGGCGAGCGAAGT
TTGCAGCACTGGCAAGGAGCAGATGAGAAGGCACGAAGATAGCAACCGCATTGCAGTATCAAAATTACCAGCCGCAGCATGTTCTGCAGCAAGGGACGACCTCTGTATCC
AAACCTGGTTGGCAGGCAGGCCAGGAGTTGGGGCCACAAAAACTGAACTGCGAGAACTGACTGATACTTTTGGGGTGTCAGCCTCTGGTGGGAGTTCCAAATCTTCAAGG
TCCCATCCCCCTTCTTCCTCATTTCCTTCTGCACCTTCCTCATCCTCCAAAATTGCTGTCACATCCCCATTCTGTAAGCCATCAACATCAACCACATCCAGCTCCTCACC
CCAATCACCATCTGCAACCTCGTCATCGTCTTCGTCAGCACGACCAGCACCCACATTATCCAGCCCACCTTCAAATATTCCTTTCATGACTCTCAGAAGTGGCCAATCAC
CACCGCACATGACTGGAGTAGGAGGCAAGAGGAGGGATGCGGTCTTGCCTTCTGGTAAAGATGGAATGTCATCTCCCAATTCAGCAGCTAGCCTTTCAGCTACATCATGT
AAACCATGGGTTGATGCTGTGATGTACGCAAGAGGCGTATTCCACGATGCCTGCATTGCCTTGACGAAGAGCCTCCACACCCAGCCTATACCAATGATCTTTCTCATCAA
TTGCTGTAGCAGAAGCAACTGCAATCTGAATGTTTCCACTCTCAAGAGCCAAATTGAACCTGGTTCTCTCGTCCTTCACAAAGGTTGTGTAAATAAAAACCCCATTATCA
TCCCATGCTCCACTCTTTACACGAATTGTTTCATGGAGAGTGCACTGGTGAACAAGCTTCTTGTTAGCAATAATAATTGCATGTTTGCTAAGCAATGCAACACTCTCCAT
ATCATTGGACCAAACAACAGAATCGCCACTTATAGCAAAGGCCGGTCTTTCTCTCTCCAGCTTAAAGACAATCATGCCACTGTCATGCCCAGCCGCCAACAAATTCATCT
CAGGTCAAGTACCGTTCATTCGCCACAATTTCACCTGTCGATCATCAGCCCCAGACACGATCAACGGCAGGCACTCAGCAATTACTATCCTAAAGCAAAGAAGAGGAAAG
ACGTGACCTCCAGACACAAAAAGAGGCTGAGACTTGTGAAAGTGAACACCACGAACAGGCCCCTCATGTTCATCAAATCTATCAATAAGCGTCCCCATCCGGTAATCCCA
CAGCTGGATCACTCCGCTGTGAAGACTTGCAAGGATCCATGGCCTCTTACTGTGGAAACTCAACCCTTTGACTCTATTACTCTTGGTTTCAAACTTCGTCAGCATCTTCT
TCTTCACCCAAAGGAATTC
mRNA sequenceShow/hide mRNA sequence
GTTTTGCTCCAGTTTCTTTTACCTTCCACAAGGAGACGTGAAGACGTGAATACTCAACAACAAAGCTCCTGTTCTTCAGAAGATAATCTCAAGAAGTCGGCGAGCGAAGT
TTGCAGCACTGGCAAGGAGCAGATGAGAAGGCACGAAGATAGCAACCGCATTGCAGTATCAAAATTACCAGCCGCAGCATGTTCTGCAGCAAGGGACGACCTCTGTATCC
AAACCTGGTTGGCAGGCAGGCCAGGAGTTGGGGCCACAAAAACTGAACTGCGAGAACTGACTGATACTTTTGGGGTGTCAGCCTCTGGTGGGAGTTCCAAATCTTCAAGG
TCCCATCCCCCTTCTTCCTCATTTCCTTCTGCACCTTCCTCATCCTCCAAAATTGCTGTCACATCCCCATTCTGTAAGCCATCAACATCAACCACATCCAGCTCCTCACC
CCAATCACCATCTGCAACCTCGTCATCGTCTTCGTCAGCACGACCAGCACCCACATTATCCAGCCCACCTTCAAATATTCCTTTCATGACTCTCAGAAGTGGCCAATCAC
CACCGCACATGACTGGAGTAGGAGGCAAGAGGAGGGATGCGGTCTTGCCTTCTGGTAAAGATGGAATGTCATCTCCCAATTCAGCAGCTAGCCTTTCAGCTACATCATGT
AAACCATGGGTTGATGCTGTGATGTACGCAAGAGGCGTATTCCACGATGCCTGCATTGCCTTGACGAAGAGCCTCCACACCCAGCCTATACCAATGATCTTTCTCATCAA
TTGCTGTAGCAGAAGCAACTGCAATCTGAATGTTTCCACTCTCAAGAGCCAAATTGAACCTGGTTCTCTCGTCCTTCACAAAGGTTGTGTAAATAAAAACCCCATTATCA
TCCCATGCTCCACTCTTTACACGAATTGTTTCATGGAGAGTGCACTGGTGAACAAGCTTCTTGTTAGCAATAATAATTGCATGTTTGCTAAGCAATGCAACACTCTCCAT
ATCATTGGACCAAACAACAGAATCGCCACTTATAGCAAAGGCCGGTCTTTCTCTCTCCAGCTTAAAGACAATCATGCCACTGTCATGCCCAGCCGCCAACAAATTCATCT
CAGGTCAAGTACCGTTCATTCGCCACAATTTCACCTGTCGATCATCAGCCCCAGACACGATCAACGGCAGGCACTCAGCAATTACTATCCTAAAGCAAAGAAGAGGAAAG
ACGTGACCTCCAGACACAAAAAGAGGCTGAGACTTGTGAAAGTGAACACCACGAACAGGCCCCTCATGTTCATCAAATCTATCAATAAGCGTCCCCATCCGGTAATCCCA
CAGCTGGATCACTCCGCTGTGAAGACTTGCAAGGATCCATGGCCTCTTACTGTGGAAACTCAACCCTTTGACTCTATTACTCTTGGTTTCAAACTTCGTCAGCATCTTCT
TCTTCACCCAAAGGAATTC
Protein sequenceShow/hide protein sequence
VLLQFLLPSTRRREDVNTQQQSSCSSEDNLKKSASEVCSTGKEQMRRHEDSNRIAVSKLPAAACSAARDDLCIQTWLAGRPGVGATKTELRELTDTFGVSASGGSSKSSR
SHPPSSSFPSAPSSSSKIAVTSPFCKPSTSTTSSSSPQSPSATSSSSSSARPAPTLSSPPSNIPFMTLRSGQSPPHMTGVGGKRRDAVLPSGKDGMSSPNSAASLSATSC
KPWVDAVMYARGVFHDACIALTKSLHTQPIPMIFLINCCSRSNCNLNVSTLKSQIEPGSLVLHKGCVNKNPIIIPCSTLYTNCFMESALVNKLLVSNNNCMFAKQCNTLH
IIGPNNRIATYSKGRSFSLQLKDNHATVMPSRQQIHLRSSTVHSPQFHLSIISPRHDQRQALSNYYPKAKKRKDVTSRHKKRLRLVKVNTTNRPLMFIKSINKRPHPVIP
QLDHSAVKTCKDPWPLTVETQPFDSITLGFKLRQHLLLHPKEF