; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G214890 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G214890
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description40S ribosomal protein S12
Genome locationCiama_Chr11:28210924..28223135
RNA-Seq ExpressionCaUC11G214890
SyntenyCaUC11G214890
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000530 - Ribosomal protein S12e
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571063.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]2.7e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

XP_022954225.1 40S ribosomal protein S12-like [Cucurbita moschata]2.7e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

XP_023512603.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]2.7e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

XP_038896811.1 40S ribosomal protein S12-like [Benincasa hispida]2.7e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

XP_038901505.1 40S ribosomal protein S12-like [Benincasa hispida]2.7e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

TrEMBL top hitse value%identityAlignment
A0A0A0LM61 40S ribosomal protein S121.3e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

A0A5D3BJY5 40S ribosomal protein S121.3e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

A0A6J1GQC3 40S ribosomal protein S121.3e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

A0A6J1JGV5 40S ribosomal protein S121.3e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

A0A6J1JWC7 40S ribosomal protein S121.3e-41100Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

SwissProt top hitse value%identityAlignment
P84175 40S ribosomal protein S122.8e-2561.73Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        A LCVL  +C++P YVKLV+ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  +++++
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

Q76I81 40S ribosomal protein S122.8e-2561.73Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        A LCVL  +C++P YVKLV+ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  +++++
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

Q9S9P1 40S ribosomal protein S12-17.4e-3483.95Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

Q9SKZ3 40S ribosomal protein S12-23.0e-3582.72Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

Q9XHS0 40S ribosomal protein S124.2e-3784.34Show/hide
Query:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        HAAQLCVL EDC+QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E L+IVQ++
Subjt:  HAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

Arabidopsis top hitse value%identityAlignment
AT1G15930.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein5.2e-3583.95Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein5.2e-3583.95Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGE+  AL IV KH
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.1e-3682.72Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

AT2G32060.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.1e-3682.72Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH

AT2G32060.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.1e-3682.72Show/hide
Query:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH
        AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+IV+KH
Subjt:  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGCAGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGATTGCAACCAGCCAGATTACGTTAAACTCGTCAA
GGCACTTTGTGCGGAGCACAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAAATTGATTCCGAAGGGAAGGCTAGGAAGG
TCGTTGGGTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGGAATTGTCAAACCCCCACTTGGATGGTTGAATCCA
AACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCGAAGGCAGACGAATTCCCATTT
CTGTCTATGGCAGCAGCCTAAGTTGGAAGAGCCAGAAATGGAGGTTTATGAATCCAGTAACAAACACAACCAGCATTGTTTCCAAGAACTTCTAAGTAGTTCCGAGACCA
ACCAGAACTGA
mRNA sequenceShow/hide mRNA sequence
CATGGATTTGCCTATTCTACCCTCCACACATATTCTGTGGTTTATATTTGTTTGTATTACAAAATTCTGTTCTGCTGTGGCCAAGTTGTTCCATTCATCAGAAACCATTG
TGCAAGTAAAGTTGTTTCAATGGATTAAATGAATCAAGATAGAATGTATCACACAGTAAATGGAAGTACAAAATATCCATGTTTGGCTACCTTTCTATGGAGGAACCATG
AGTAGAAGAAGAGAGCAGTTTTATTATTAAAAAGAAAATATCGGATTTCAAATTACAAAGGCGCCTCTAGGGTTAGAAGGTTGATATAGGGCACTGCTCTAAACCCTACG
GCCAAAAATGTAAATAACGTAAAAAGGCATTATTATGAATACAACTTAGGTTTCGGAATTGTTGCCCCCGAACCCCCACCAGGGCGCATTGCCCCTAGACACTGACTTGA
GACCTCCGTGCTTGGTCATTTGGAGCGCTAGATTACATATTCAAAACATTCCAAACACCTTGCTTAGTTACATTAAGCATTGATTAAGTACGAAGCCTGCGAATTGGAAC
AGAGATTTTAGCTCATGTTTTTCTTTATCATATGAAGTTAGTTGTGCATTGCATCTACTTCAAGAAGCTGATGTGCTTGGGACCTGGATCATTAGCAATGGGAAAGAAGT
TGCATAGAATCTTTCTTGACTTTTCTTCTTCAAACTGGTTAACTAATCCATTCCAGTTTATGTGCTTTCAGATGAATATTGAACTTGTACGATGCCACATGGGCCTACTA
GTACTTCACCTTGGACTTGACTTGAGACTCACTTCTTAGAACACGATGATCCGAATTATGGTTTGAGCAGACTTATTTGAATTCATAGACCTCCTTGCCAATTTTCTGCA
AACCGAACAAGTGGAAATCAATATTAATTGAGGATGAAATAACATTGAAGGAGTTTGAACACATGACCTCTTGGACCACCTATTCTGCTACAATCTTAAATCACCGATCA
ACCCAAGCTTAAACTGATGGGTGAAGACAAATTTAATATTATATCAATTAATAGGTTTTATCTCAAAAAAGAATAAGTTGATAATTAGTTATAAATAAGGCTTTGTTTTG
CAGAAAGAAAATGTTTCATTACAACTGAGATTTGTCATTGATGTTCAAGTGGCTTTGTAGCTCTCCACTTTTTCTATTTTAACCATCTACATACAAAATTTTCCTTTACA
ATGACATTCAACACAATATCTCCAATACACTAAAATGAAGATTAAAAAAATGTCAAAATTGTGAGGAGAATTGCTCCTCGTTCTCAAATCATTCATGAAGTATGCAGTCT
AGAAGTAACATCAATGAAGGCTTCTTCTTTACAAGGAATTGTCAAACCTCCAGTTGGGTGGCTGAATCCAAACTCTTCTTCAGCCCTCTTGAGCAAGTCTTCAAATGAAG
GATGACTCAAGTAAGATATCGGAATGAAAAACCGCTTTCTTTCGGTTTCTCCTACATACACTGGAATGTAGCCTTTAGGAACATTGGATTGACATCTTGCAGAAACAGAC
TGCATCTTGAGAATTTGCTTGGTGGAGCCAAGGAGGATCGAAGGCAAACGAATTCCCATGGCTAAATTTGATTGAAGCAAGAGGACAACGAAGGACTTCGAAAAAATTTT
CGGTCTTGATATGGATCTAGAAGTGGTAAACTTCAATGCTTGAATGAGAATATGTGAGAGATCTAAGTTGGAGATTAGTTGTTTGTTTGGTGTCTATATATAGAATGAGA
AAAGAGAAGATATTGGCTTCATCAATGGCTCACATGGGTTGCTCCATTGGTTGAGGTACATTCATTTTCTGATTTGCACCAATTTCTGGAAGGTGAAAAGAACTTCAAAT
CAAGAAGAAAAATGTCAGCTGATGAAGGTGCAGCAGTTGTTGTTGAGGCTCCGGCCCCAGCTCTTGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGATTGCAACCAGCC
AGATTACGTTAAACTCGTCAAGGCACTTTGTGCGGAGCACAATGTAAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAAATTGATT
CCGAAGGGAAGGCTAGGAAGGTCGTTGGGTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAGGATCATGAGGCACTTCACATTGTCCAGAAGCACGGAATTGTCAAACCC
CCACTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCG
AAGGCAGACGAATTCCCATTTCTGTCTATGGCAGCAGCCTAAGTTGGAAGAGCCAGAAATGGAGGTTTATGAATCCAGTAACAAACACAACCAGCATTGTTTCCAAGAAC
TTCTAAGTAGTTCCGAGACCAACCAGAACTGA
Protein sequenceShow/hide protein sequence
MKVQQLLLRLRPQLLHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHGIVKPPLGWLNP
NSSSALLSRLRNEGWFKLHSEYLLGIEENRRQTNSHFCLWQQPKLEEPEMEVYESSNKHNQHCFQELLSSSETNQN