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CaUC11G214970 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G214970
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionIntegrase, catalytic core
Genome locationCiama_Chr11:28250249..28250551
RNA-Seq ExpressionCaUC11G214970
SyntenyCaUC11G214970
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037350.1 Integrase, catalytic core [Cucumis melo var. makuwa]4.4e-0662.79Show/hide
Query:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW
        SRYV A LATFE+P TYE+ SQ+IQWRK MEE+ +AL ++ +W
Subjt:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW

KAA0046986.1 Integrase, catalytic core [Cucumis melo var. makuwa]2.4e-2054.55Show/hide
Query:  MGQWQQAPVEREDLSEENHEEKELRAQSPWQSGVHDQQPPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE
        + Q QQAP E E+ ++E+ EE+++R QSPWQSG+++Q+P  +R T+ RK NSRYV+A LATFE+P TYE+ SQ+IQWRKAMEE+ D L ++ +W  +P+
Subjt:  MGQWQQAPVEREDLSEENHEEKELRAQSPWQSGVHDQQPPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE

KAA0061433.1 Integrase, catalytic core [Cucumis melo var. makuwa]2.6e-0656.25Show/hide
Query:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE
        SR+V   LATFE+P TYE+ SQ+IQWRKAMEE+ D L ++ +W  +P+
Subjt:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE

TYK19342.1 integrase [Cucumis melo var. makuwa]2.0e-0655.36Show/hide
Query:  PPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW
        P S++LTK  KS  +     LATFE+P+TYE+ASQ+IQWR+AMEE+ DAL ++ +W
Subjt:  PPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW

TYK21511.1 Integrase, catalytic core [Cucumis melo var. makuwa]6.8e-0758.33Show/hide
Query:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE
        SR+V A LATFE+P TYE+ SQ+IQWRKAMEE+ D L ++ +W  +P+
Subjt:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE

TrEMBL top hitse value%identityAlignment
A0A5A7T1U9 Integrase, catalytic core2.1e-0662.79Show/hide
Query:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW
        SRYV A LATFE+P TYE+ SQ+IQWRK MEE+ +AL ++ +W
Subjt:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW

A0A5A7TYD2 Integrase, catalytic core1.2e-2054.55Show/hide
Query:  MGQWQQAPVEREDLSEENHEEKELRAQSPWQSGVHDQQPPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE
        + Q QQAP E E+ ++E+ EE+++R QSPWQSG+++Q+P  +R T+ RK NSRYV+A LATFE+P TYE+ SQ+IQWRKAMEE+ D L ++ +W  +P+
Subjt:  MGQWQQAPVEREDLSEENHEEKELRAQSPWQSGVHDQQPPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE

A0A5A7UZQ7 Integrase, catalytic core1.2e-0656.25Show/hide
Query:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE
        SR+V   LATFE+P TYE+ SQ+IQWRKAMEE+ D L ++ +W  +P+
Subjt:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE

A0A5D3D739 Integrase9.5e-0755.36Show/hide
Query:  PPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW
        P S++LTK  KS  +     LATFE+P+TYE+ASQ+IQWR+AMEE+ DAL ++ +W
Subjt:  PPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSW

A0A5D3DCW1 Integrase, catalytic core3.3e-0758.33Show/hide
Query:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE
        SR+V A LATFE+P TYE+ SQ+IQWRKAMEE+ D L ++ +W  +P+
Subjt:  SRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAATGGCAACAAGCTCCAGTAGAAAGAGAAGATCTTTCAGAAGAGAACCACGAAGAAAAAGAACTAAGGGCACAAAGTCCTTGGCAAAGTGGTGTACATGATCA
ACAACCACCATCACAAAGATTAACCAAACAAAGAAAATCAAATTCCAGATATGTGAGTGCAACATTAGCAACATTTGAAAAGCCATTGACATATGAAGATGCATCACAGA
ATATCCAATGGAGAAAGGCCATGGAAGAACAAGAGGACGCATTGAGCAGACATCGAAGTTGGTACTCAATACCAGAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAATGGCAACAAGCTCCAGTAGAAAGAGAAGATCTTTCAGAAGAGAACCACGAAGAAAAAGAACTAAGGGCACAAAGTCCTTGGCAAAGTGGTGTACATGATCA
ACAACCACCATCACAAAGATTAACCAAACAAAGAAAATCAAATTCCAGATATGTGAGTGCAACATTAGCAACATTTGAAAAGCCATTGACATATGAAGATGCATCACAGA
ATATCCAATGGAGAAAGGCCATGGAAGAACAAGAGGACGCATTGAGCAGACATCGAAGTTGGTACTCAATACCAGAAGGCTAA
Protein sequenceShow/hide protein sequence
MGQWQQAPVEREDLSEENHEEKELRAQSPWQSGVHDQQPPSQRLTKQRKSNSRYVSATLATFEKPLTYEDASQNIQWRKAMEEQEDALSRHRSWYSIPEG