; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G215800 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G215800
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionAlba domain-containing protein
Genome locationCiama_Chr11:29115382..29117627
RNA-Seq ExpressionCaUC11G215800
SyntenyCaUC11G215800
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599408.1 hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5383.67Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEER E GD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

XP_004139317.1 uncharacterized protein At2g34160 [Cucumis sativus]2.0e-5585.03Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEERGEIG+ DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

XP_008457716.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]3.1e-5686.39Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEERGEIGD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

XP_022946216.1 uncharacterized protein At2g34160-like [Cucurbita moschata]1.4e-5383.67Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEER E GD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

XP_038890892.1 uncharacterized protein At2g34160-like [Benincasa hispida]5.8e-5584.67Show/hide
Query:  MEEIVEGVNSMNLSS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQK
        MEEIVEGVNSMNLSS   DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQK
Subjt:  MEEIVEGVNSMNLSS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQK

Query:  AKILNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
        AK                 IEILLGKT+NFDELMAAAAEERGEIGD DEQ
Subjt:  AKILNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

TrEMBL top hitse value%identityAlignment
A0A1S3C651 uncharacterized protein At2g34160-like1.5e-5686.39Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEERGEIGD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

A0A5D3BH52 DNA/RNA-binding protein Alba-like protein1.5e-5686.39Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NLSSDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEERGEIGD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

A0A6J1CNW3 uncharacterized protein At2g34160-like2.0e-5382.31Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGVNS+NL  D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIATVVTVAEILKNNGL VEKKIATSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEERG+ GD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

A0A6J1G312 uncharacterized protein At2g34160-like6.9e-5483.67Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEILLGKTENFDELMAAAAEER E GD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

A0A6J1KJN4 uncharacterized protein At2g34160-like2.0e-5382.99Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+SMNL SDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEI LGKTENFDELMAAAAEER E GD DEQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.9e-4573.91Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL++DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+++VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEER
                        IEI L K+E FDELMAAA EE+
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEER

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein3.6e-4772.79Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI EGVN+MNL+ D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ
                        IEI L K+E FDELMAAA EE+ E  +  EQ
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQ

AT2G34160.1 Alba DNA/RNA-binding protein1.4e-4673.91Show/hide
Query:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI
        MEEI +GVN+MNL++DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+++VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAK 
Subjt:  MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKI

Query:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEER
                        IEI L K+E FDELMAAA EE+
Subjt:  LNNDKTGLQCLVPWSMIEILLGKTENFDELMAAAAEER

AT3G04620.1 Alba DNA/RNA-binding protein4.6e-3464.66Show/hide
Query:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWS
        +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH+EVELSALGMAI TVVT++EILKNNGLA EKK+ TSTV +KD+++G+ VQKAK                
Subjt:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDKTGLQCLVPWS

Query:  MIEILLGKTENFDELM
         IEI+LGK++ FD L+
Subjt:  MIEILLGKTENFDELM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAATTGTAGAAGGCGTGAACTCCATGAACTTGAGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTTTTCTAT
GTCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACAGTTGTTACAGTTGCCGAAATTTTGAAAAAC
AATGGATTGGCTGTTGAGAAGAAGATCGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATATTAAATAATGACAAG
ACTGGTCTCCAATGTTTAGTTCCATGGTCTATGATTGAGATATTGCTGGGTAAAACTGAGAACTTCGACGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGAGAG
ATAGGTGATGGAGATGAGCAGATTTAA
mRNA sequenceShow/hide mRNA sequence
AGAAGGGTATTATTGTACTTTTGCATACACATAAAATGAAGAAAATGCTTAACAAATGAAGTAATAGAAAATCAGAGTTTATAATAAGTCTTCCTTCGACCTTCA
ATAACCCGAGAAGCTAGGGTTTTGAGTTGGAGTTTTTCTAGGGTTTTTGCGAGGTTGAGGAAGAGCTTCATGGAAGAAATTGTAGAAGGCGTGAACTCCATGAAC
TTGAGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTTTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGAT
GAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACAGTTGTTACAGTTGCCGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAAGATCGCAACCTCA
ACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATATTAAATAATGACAAGACTGGTCTCCAATGTTTAGTTCCATGGTCTATGATT
GAGATATTGCTGGGTAAAACTGAGAACTTCGACGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGAGAGATAGGTGATGGAGATGAGCAGATTTAAAAGATGGAC
TGCGTTTGCTGTATCTTTTTATTTTAGCTATAATTTTTGTTAGCAATGTCGAATTTTCCATCTATTATTTGTAGCTCTTTACGGATACGCAAGAAGTTGAGGCAC
TATTTCTCATTCATTGTGAGTTTGTTCATAAATTTCATTTTAGGGATCTTCACAATTTATTTGGAGTCTTTTACCATATAGAAAACCAAATTTTGTATTGTTATT
TTTGCTACCAATCATTTGGTTTTTTTTTTTCCCTTCTTTTTTACAAATTTTATTTTTCTATATATCCCATGTCAAGAGTAGATATTGAAATGTAATAATATATTG
GTATTGAAGCAA
Protein sequenceShow/hide protein sequence
MEEIVEGVNSMNLSSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKILNNDK
TGLQCLVPWSMIEILLGKTENFDELMAAAAEERGEIGDGDEQI