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CaUC11G215970 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G215970
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCiama_Chr11:29316690..29318036
RNA-Seq ExpressionCaUC11G215970
SyntenyCaUC11G215970
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PQQ20230.1 pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora]5.0e-2581.58Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLE
        MI +LK+AGY+PEKSEVL ++DEEEKETALSLHSEKLAIAFGLIST P T I +VKNLRVC+DCHTATKIISKV E
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLE

TQD83682.1 hypothetical protein C1H46_030757 [Malus baccata]2.9e-2582.43Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI++LK+AGY+PEKSEVL ++DEEEKETALSLHSEKLAIAFGLISTKP T I +VKNLRVC+DCHTATK+ISKV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

XP_008390133.3 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Malus domestica]6.5e-2581.08Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI++LK+AGY+PE+SEVL ++DEEEKETALSLHSEKLAIAFGLISTKP T I +VKNLRVC+DCHTATK+ISKV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

XP_009371401.1 PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Pyrus x bretschneideri]2.9e-2582.43Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI++LK+AGY+PEKSEVL ++DEEEKETALSLHSEKLAIAFGLISTKP T I +VKNLRVC+DCHTATK+ISKV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

XP_024182101.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Rosa chinensis]3.5e-2683.78Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI++LK+AGY+P+KSEVLF+MDEEEKETALSLHSEKLAIAFGLIST P TPI +VKNLRVC+DCHTATK+ISKV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

TrEMBL top hitse value%identityAlignment
A0A2N9FQM1 DYW_deaminase domain-containing protein2.9e-2681.08Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MIN+LK+AGY+P+KSEVLF+M+EEEKETALSLHSEKLAIAFGL+ST P TPI +VKNLRVC+DCHTATK+IS+V
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

A0A2P6RJ71 Putative tetratricopeptide-like helical domain, DYW domain-containing protein1.7e-2683.78Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI++LK+AGY+P+KSEVLF+MDEEEKETALSLHSEKLAIAFGLIST P TPI +VKNLRVC+DCHTATK+ISKV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

A0A314ZNK1 Pentatricopeptide repeat-containing protein2.4e-2581.58Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLE
        MI +LK+AGY+PEKSEVL ++DEEEKETALSLHSEKLAIAFGLIST P T I +VKNLRVC+DCHTATKIISKV E
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLE

A0A540LBP5 DYW_deaminase domain-containing protein1.4e-2582.43Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI++LK+AGY+PEKSEVL ++DEEEKETALSLHSEKLAIAFGLISTKP T I +VKNLRVC+DCHTATK+ISKV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

M5VTK1 DYW_deaminase domain-containing protein7.0e-2582.43Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI +LK+AGY+PEKSEVL ++DEEEKETALSLHSEKLAIAFGLIST P T I +VKNLRVC+DCHTATKIISKV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

SwissProt top hitse value%identityAlignment
Q683I9 Pentatricopeptide repeat-containing protein At3g628906.1e-1855.41Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        ++ +L+EAGY+ +  EVL +++E++KE ALS HSEKLAIAF L+ T+P TP+ I+KNLR+C DCH   K+ISK+
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic8.6e-2070Show/hide
Query:  LKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        L++AG++P+ SEVL EM+EE KE AL  HSEKLAIAFGLISTKP T + IVKNLRVC +CH ATK+ISK+
Subjt:  LKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331702.5e-1960.81Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI  +K+ GY+PE    L +++EEEKE AL  HSEKLA+AFGL+ST P TPI ++KNLRVC DCH A K I+KV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307005.5e-1957.89Show/hide
Query:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLEALL
        K++EAGY PE    L +++EEE+E  + +HSE+LAIAFGLI+T+P T I I+KNLRVC DCHT TK+ISK+ E ++
Subjt:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLEALL

Q9SZT8 Pentatricopeptide repeat-containing protein ELI1, chloroplastic1.2e-1859.15Show/hide
Query:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        ++K  GY+P  + VL +++E EKE +L +HSE+LAIA+GLISTKP +P+ I KNLRVC+DCHT TK+ISK+
Subjt:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.1e-2170Show/hide
Query:  LKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        L++AG++P+ SEVL EM+EE KE AL  HSEKLAIAFGLISTKP T + IVKNLRVC +CH ATK+ISK+
Subjt:  LKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein4.4e-1955.41Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        ++ +L+EAGY+ +  EVL +++E++KE ALS HSEKLAIAF L+ T+P TP+ I+KNLR+C DCH   K+ISK+
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein3.9e-2057.89Show/hide
Query:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLEALL
        K++EAGY PE    L +++EEE+E  + +HSE+LAIAFGLI+T+P T I I+KNLRVC DCHT TK+ISK+ E ++
Subjt:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLEALL

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-2060.81Show/hide
Query:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        MI  +K+ GY+PE    L +++EEEKE AL  HSEKLA+AFGL+ST P TPI ++KNLRVC DCH A K I+KV
Subjt:  MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV

AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-2059.15Show/hide
Query:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV
        ++K  GY+P  + VL +++E EKE +L +HSE+LAIA+GLISTKP +P+ I KNLRVC+DCHT TK+ISK+
Subjt:  KLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAATAAGTTGAAGGAAGCAGGCTACATTCCTGAGAAATCAGAAGTCCTCTTTGAGATGGATGAAGAAGAAAAGGAGACTGCTCTTAGCCTTCACAGTGAGAAACT
AGCCATTGCATTTGGACTTATTAGCACAAAACCTGAGACACCAATCTGGATAGTGAAAAATCTTCGCGTTTGCACTGATTGCCACACTGCTACTAAGATCATCTCAAAGG
TTCTTGAAGCTCTCCTGGGCCGTTTCTTGCTTGAACCTCCATCTGGCGCCACTGGTAAAGCAATGCTTCATCTTCCTGCTCCTGCTGTTGATCGTTCTTGTGTGATTGTG
GATGGAGGTTTGAGACTTGAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAATAAGTTGAAGGAAGCAGGCTACATTCCTGAGAAATCAGAAGTCCTCTTTGAGATGGATGAAGAAGAAAAGGAGACTGCTCTTAGCCTTCACAGTGAGAAACT
AGCCATTGCATTTGGACTTATTAGCACAAAACCTGAGACACCAATCTGGATAGTGAAAAATCTTCGCGTTTGCACTGATTGCCACACTGCTACTAAGATCATCTCAAAGG
TTCTTGAAGCTCTCCTGGGCCGTTTCTTGCTTGAACCTCCATCTGGCGCCACTGGTAAAGCAATGCTTCATCTTCCTGCTCCTGCTGTTGATCGTTCTTGTGTGATTGTG
GATGGAGGTTTGAGACTTGAAGCTTGA
Protein sequenceShow/hide protein sequence
MINKLKEAGYIPEKSEVLFEMDEEEKETALSLHSEKLAIAFGLISTKPETPIWIVKNLRVCTDCHTATKIISKVLEALLGRFLLEPPSGATGKAMLHLPAPAVDRSCVIV
DGGLRLEA