; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G217030 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G217030
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibosomal protein L18ae family
Genome locationCiama_Chr11:30532570..30535214
RNA-Seq ExpressionCaUC11G217030
SyntenyCaUC11G217030
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]1.7e-4651.6Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD  DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WNARRDPRERAGLAASAIA
Subjt:  WNARRDPRERAGLAASAIA

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]1.3e-4651.6Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD  DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WNARRDPRERAGLAASAIA
Subjt:  WNARRDPRERAGLAASAIA

XP_011648592.1 uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]1.7e-4651.6Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD  DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WNARRDPRERAGLAASAIA
Subjt:  WNARRDPRERAGLAASAIA

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]4.7e-4449.32Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPN KID TVQLVKSVSD+HLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD SDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WN+RRDPRERAGLAAS+IA
Subjt:  WNARRDPRERAGLAASAIA

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]1.6e-4752.51Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD SDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WNARRDPRERAGLAASAIA
Subjt:  WNARRDPRERAGLAASAIA

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein8.4e-4751.6Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD  DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WNARRDPRERAGLAASAIA
Subjt:  WNARRDPRERAGLAASAIA

A0A1S3CAZ9 uncharacterized protein LOC1034986586.5e-4751.6Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD  DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WNARRDPRERAGLAASAIA
Subjt:  WNARRDPRERAGLAASAIA

A0A5D3CGZ6 60S ribosomal protein L18a-16.5e-4751.6Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD  DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WNARRDPRERAGLAASAIA
Subjt:  WNARRDPRERAGLAASAIA

A0A6J1G4J6 uncharacterized protein LOC1114506862.3e-4449.32Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPN KID TVQLVKSVSD+HLDLLRPSARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD SDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WN+RRDPRERAGLAAS+IA
Subjt:  WNARRDPRERAGLAASAIA

A0A6J1KAT7 uncharacterized protein LOC1114937955.1e-4448.86Show/hide
Query:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL
        MDPN KID TVQLVKSVSD+HLDLLRP+ARICSIFK                                                                
Subjt:  MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSL

Query:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF
                                              GQGKD SDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYF
Subjt:  TVHGLDSRIYQSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYF

Query:  WNARRDPRERAGLAASAIA
        WN+RRDPRERAGLAAS+IA
Subjt:  WNARRDPRERAGLAASAIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family7.9e-2153.61Show/hide
Query:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSYDNPSISTLATVFLI
        ++ +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIA   +   S++ + TV ++
Subjt:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSYDNPSISTLATVFLI

AT1G54217.2 Ribosomal protein L18ae family2.1e-2154.64Show/hide
Query:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSYDNPSISTLATVFLI
        D+ +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIA   +   S++ + TV ++
Subjt:  DVSDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSYDNPSISTLATVFLI

AT4G26060.1 Ribosomal protein L18ae family1.3e-2662.64Show/hide
Query:  RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSYDNPSISTLATVFLIF
        + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF FP LWYYAT+LYF N  R+DPRERAGLAASAI    +     S L  V ++F
Subjt:  RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSYDNPSISTLATVFLIF

AT5G57060.1 FUNCTIONS IN: molecular_function unknown8.7e-2863.64Show/hide
Query:  HLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSY
        H    KD     + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF N  R+DPRERAGLAASAI    +
Subjt:  HLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSY

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)8.7e-2863.64Show/hide
Query:  HLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSY
        H    KD     + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF N  R+DPRERAGLAASAI    +
Subjt:  HLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIALFSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAATGGAAAGATTGACCAGACGGTGCAACTGGTGAAGTCGGTTTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGT
ATATATTATTACCTTATATTGGTTGCTCAGGAATGAAATTAGTCGACCATTTTCAAAATGCCTTTATATTGCAATCATCAGTGACTTCTCGTCATTGAGGATGGAATTTC
TGGAATCGATAGGGCTTTCATTTTTTACAGTTGTGAGATACTTAATAGCATCATTGCTACTCGTTTTTAACACTTCTTTGACGGTGCATGGTCTAGATAGTAGGATTTAT
CAGTCTGATGTTTTGGAGATGTTGATTGCTAGAGTCTTTTCCTTGTATATTCATTTATGCTCAAAATGGTTAATAATACACCTAGGCCAAGGAAAAGATGTTTCAGATCA
CATAAGGAGCAAGTACACACTTCTCAGGGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAACCTCTCCCGTGTTTCGGCTGTGGCATAGGATGGTTTTCTTTCCTTC
TTGGGTTTTTTTTCCCACTACTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCCCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCATCTGCCATTGCTCTT
TTCTCCTATGATAACCCATCCATCTCCACACTTGCAACTGTATTCTTAATCTTTTGCCCATTCAGCCTTGCCAATGCAGTTTCAATCTGGACAGCCTTGCTCGACTTTGG
TGTTTTCTGC
mRNA sequenceShow/hide mRNA sequence
AATTTAATTTTGTGGGCTGTTCGTTATTTTTCAAGTCTCACAAACAAGGGAGTCAATTTTCTCAGCGTTTGGGTGATGAGAGATGAAGTTGATCGTTGCTTGACGTTTAA
ATTTCCTGTTTAGTTTAAGAAAAGCGTGTTCATTTGTTCATTCGTACGCCAATTCCATTTCTGATCCGTCGAAAGCGAGAGAAAATTGTAGTTTCAGTCGCTTCCATCCA
CTCACCTCTTAGGCTCTTACATCTGTTTCGGTTTAGAAAGTGGATACTGCGAATTTGAAGAGTTCATCCTTCCATAAACACCAGCTTCAACATGGATCCAAATGGAAAGA
TTGACCAGACGGTGCAACTGGTGAAGTCGGTTTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCAATATTCAAAGTATATATTATTACCTTATAT
TGGTTGCTCAGGAATGAAATTAGTCGACCATTTTCAAAATGCCTTTATATTGCAATCATCAGTGACTTCTCGTCATTGAGGATGGAATTTCTGGAATCGATAGGGCTTTC
ATTTTTTACAGTTGTGAGATACTTAATAGCATCATTGCTACTCGTTTTTAACACTTCTTTGACGGTGCATGGTCTAGATAGTAGGATTTATCAGTCTGATGTTTTGGAGA
TGTTGATTGCTAGAGTCTTTTCCTTGTATATTCATTTATGCTCAAAATGGTTAATAATACACCTAGGCCAAGGAAAAGATGTTTCAGATCACATAAGGAGCAAGTACACA
CTTCTCAGGGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAACCTCTCCCGTGTTTCGGCTGTGGCATAGGATGGTTTTCTTTCCTTCTTGGGTTTTTTTTCCCACT
ACTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCCCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCATCTGCCATTGCTCTTTTCTCCTATGATAACCCAT
CCATCTCCACACTTGCAACTGTATTCTTAATCTTTTGCCCATTCAGCCTTGCCAATGCAGTTTCAATCTGGACAGCCTTGCTCGACTTTGGTGTTTTCTGC
Protein sequenceShow/hide protein sequence
MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKVYIITLYWLLRNEISRPFSKCLYIAIISDFSSLRMEFLESIGLSFFTVVRYLIASLLLVFNTSLTVHGLDSRIY
QSDVLEMLIARVFSLYIHLCSKWLIIHLGQGKDVSDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAL
FSYDNPSISTLATVFLIFCPFSLANAVSIWTALLDFGVFC