CuGenDBv2

Gene ID	CaUC11G217080
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Photosystem II PsbX
Genome location	Ciama_Chr11:30578176..30578553
RNA-Seq Expression	CaUC11G217080
Synteny	CaUC11G217080
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

8.4e-47

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_008459641.1 PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]

9.3e-46

90.4

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SM MPITNAAQKR R AEAFAKPLPLRPSNKP   S SS+SS KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_011648590.1 uncharacterized protein LOC105434533 [Cucumis sativus]

7.1e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

9.3e-46

90.4

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGA+IGVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

3.8e-47

92.8

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   +ASSNSS KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

3.4e-46

91.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A1S3CAS0 uncharacterized protein LOC103498700

4.5e-46

90.4

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SM MPITNAAQKR R AEAFAKPLPLRPSNKP   S SS+SS KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A5A7V6L0 Membrane family protein

4.1e-47

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+SMAMPITNAAQKRAR AEAFAKPLPLRPSNKP   S SS+SS KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGAVIGV+NFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

4.5e-46

90.4

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVVTAILGA+IGVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

1.7e-45

89.6

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSAVSMAMPITNA QKRAR+ +AFAK LPLRPSNKPT   ASSNS  KFQV+ASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        AGGVVV AILGA+IGVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

1.3e-26

55.2

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Query:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA
        MASTSA+S+  P+          +  F KPLPL+PS    +  A+   + + QV+A   +KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIA

Query:  AGGVVVTAILGAVIGVSNFDPVKRT
        +GG+V+T I+G V+GVSNFDPVKRT
Subjt:  AGGVVVTAILGAVIGVSNFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCGATTACTAACGCAGCTCAGAAGAGAGCGAGGAACGCTGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCTTCCAA
CAAGCCAACAAGTGCTTCGGCTTCATCGAACTCCAGCGTCAAGTTTCAAGTGCAAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTT
CCATGGTGCTTCCTGAGGTGGCTGAAGCTGCCGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCACTGCTATCTTG
GGTGCAGTTATCGGTGTCTCCAATTTCGATCCCGTCAAGCGGACTTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITNAAQKRARNAEAFAKPLPLRPSNKPTSASASSNSSVKFQVQASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIL
GAVIGVSNFDPVKRT

CaUC11G217080 (gene) of Watermelon (USVL246-FR2) v1 genome