CuGenDBv2

Gene ID	CaUC11G217540
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	PHD finger protein MALE STERILITY 1
Genome location	Ciama_Chr11:30991403..30991786
RNA-Seq Expression	CaUC11G217540
Synteny	CaUC11G217540
Gene Ontology terms	GO:0009846 - pollen germination (biological process) GO:0010208 - pollen wall assembly (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0048655 - anther wall tapetum morphogenesis (biological process) GO:0055046 - microgametogenesis (biological process) GO:0071367 - cellular response to brassinosteroid stimulus (biological process) GO:0005634 - nucleus (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032172.1 PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa]

3.3e-43

81.25

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Query:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        T+ IGKKRRR  GG GGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G GF+CWSFRLQVQRQPP HVVLFV+EEAVE+ TVA+R+CKQ
Subjt:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVGKVSKAYI
        CQYVGKVSKA I
Subjt:  CQYVGKVSKAYI

XP_004140423.1 PHD finger protein MALE STERILITY 1 [Cucumis sativus]

1.8e-41

82.86

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Query:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECG-GGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        T+ IGKKRRR  GG GGERVFRF +FGENGHPAELVG+FRENVEALL FG+WESGEC   GF+CWSFRLQVQRQPPFHVVLFV+EEAVE  TVAAR+CKQ
Subjt:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECG-GGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

XP_008456986.1 PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo]

1.6e-40

80.95

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Query:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        T+ IGKKRRR  GG GGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G GF+CWSFRLQVQRQPP HVVLFV+EEAVE+ TVA+R+CKQ
Subjt:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

XP_022156066.1 PHD finger protein MALE STERILITY 1 [Momordica charantia]

2.7e-37

74.29

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Query:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        M EAIG+KRRR G G GGE+VFRF +FGENG+P E VG+FRENV ALL FGRWESG+C GG Q WSF+LQVQRQPPFH+V+FVVEE VEAA  A R CK 
Subjt:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

XP_038891568.1 PHD finger protein MALE STERILITY 1 [Benincasa hispida]

9.7e-43

86.79

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Query:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECK
        MTE  GKKRRR GGG GGERVFRF +FGENGHPAELVG FRENVEALL FGR E GECGG GF+CWSFRLQVQRQPPFHVVLFVVEEA EAATVAAR+CK
Subjt:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECK

Query:  QCQYVG
        QCQYVG
Subjt:  QCQYVG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPP3 Uncharacterized protein

2.5e-44

82.14

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Query:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECG-GGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        T+ IGKKRRR  GG GGERVFRF +FGENGHPAELVG+FRENVEALL FG+WESGEC   GF+CWSFRLQVQRQPPFHVVLFV+EEAVE  TVAAR+CKQ
Subjt:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECG-GGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVGKVSKAYI
        CQYVGK+SKA I
Subjt:  CQYVGKVSKAYI

A0A1S3C4G3 PHD finger protein MALE STERILITY 1

7.5e-41

80.95

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Query:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        T+ IGKKRRR  GG GGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G GF+CWSFRLQVQRQPP HVVLFV+EEAVE+ TVA+R+CKQ
Subjt:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

A0A5D3CR48 PHD finger protein MALE STERILITY 1

1.6e-43

81.25

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Query:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        T+ IGKKRRR  GG GGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G GF+CWSFRLQVQRQPP HVVLFV+EEAVE+ TVA+R+CKQ
Subjt:  TEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG-GFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVGKVSKAYI
        CQYVGKVSKA I
Subjt:  CQYVGKVSKAYI

A0A6J1DTQ4 PHD finger protein MALE STERILITY 1

1.3e-37

74.29

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Query:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ
        M EAIG+KRRR G G GGE+VFRF +FGENG+P E VG+FRENV ALL FGRWESG+C GG Q WSF+LQVQRQPPFH+V+FVVEE VEAA  A R CK 
Subjt:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

A0A6J1KWF9 PHD finger protein MALE STERILITY 1

2.2e-32

63.72

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Query:  MTEAIGKKRRR--------VGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAAT
        M + I  KRRR            S G+RVFRF +FG+NGHP + +G F ENVEALL FG WE+GEC   F+CWSFRLQVQR PPFHVVLFVVEE  EAAT
Subjt:  MTEAIGKKRRR--------VGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAAT

Query:  VAARECKQCQYVG
          AR CKQCQYVG
Subjt:  VAARECKQCQYVG

SwissProt top hits

e value

%identity

Alignment

Q67V61 PHD finger protein PERSISTENT TAPETAL CELL 1

1.7e-13

42.99

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Query:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQ--FRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAAREC
        M  ++G  RRR      GE +FRF  F + G+PA   G   FR+NV  LL F   E+G   G  +CWSF+L++ R PP  V LFVVEE  E A    R+C
Subjt:  MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQ--FRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAAREC

Query:  KQCQYVG
          C+++G
Subjt:  KQCQYVG

Q9FMS5 PHD finger protein MALE STERILITY 1

2.1e-16

50.49

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Query:  IGKKRRRVGGGSGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQP-PFHVVLFVVEEAVEAATVAARECKQCQ
        I KKR+R     G  RVFR   FGE+GHPAE+    FR+N+  LLEFG +ES    G    WSF+L++QR P P +V+LFVVEE +EA+      C  CQ
Subjt:  IGKKRRRVGGGSGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQP-PFHVVLFVVEEAVEAATVAARECKQCQ

Query:  YVG
        YVG
Subjt:  YVG

Arabidopsis top hits

e value

%identity

Alignment

AT5G22260.1 RING/FYVE/PHD zinc finger superfamily protein

1.5e-17

50.49

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Query:  IGKKRRRVGGGSGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQP-PFHVVLFVVEEAVEAATVAARECKQCQ
        I KKR+R     G  RVFR   FGE+GHPAE+    FR+N+  LLEFG +ES    G    WSF+L++QR P P +V+LFVVEE +EA+      C  CQ
Subjt:  IGKKRRRVGGGSGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQP-PFHVVLFVVEEAVEAATVAARECKQCQ

Query:  YVG
        YVG
Subjt:  YVG

Sequences

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CDS sequence

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ATGACGGAGGCAATCGGGAAGAAGAGGAGGAGGGTCGGCGGCGGCAGCGGCGGAGAGAGGGTGTTCAGATTCAACAACTTTGGGGAGAATGGTCATCCGGCAGAGCTTGT
GGGGCAGTTCCGGGAGAATGTGGAGGCGCTACTAGAGTTCGGGCGGTGGGAGAGTGGAGAGTGTGGCGGGGGGTTCCAGTGTTGGTCGTTTCGTCTGCAGGTTCAGCGGC
AACCGCCTTTCCACGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCGGCCACGGTGGCGGCGAGGGAGTGTAAACAATGCCAGTATGTTGGTAAGGTTTCCAAAGCA
TATATATATATATATGAATGTTTGTTGTGTTGGTTTGGGTTTGTTTTAATTTGA

mRNA sequence

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Protein sequence

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MTEAIGKKRRRVGGGSGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGFQCWSFRLQVQRQPPFHVVLFVVEEAVEAATVAARECKQCQYVGKVSKA
YIYIYECLLCWFGFVLI

CaUC11G217540 (gene) of Watermelon (USVL246-FR2) v1 genome