; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G217630 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G217630
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionzf-RVT domain-containing protein
Genome locationCiama_Chr11:31092011..31096578
RNA-Seq ExpressionCaUC11G217630
SyntenyCaUC11G217630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3474504.1 reverse transcriptase [Gossypium australe]5.9e-0629.63Show/hide
Query:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLW----VNEFMVLSISNFGLACVGTWSIWGDC
        +W++ HNFLPT   L  RQ+  STI PVC+   E++ H+   C    + L+GI  A    + E      W    V EF + +     +  +  W IW + 
Subjt:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLW----VNEFMVLSISNFGLACVGTWSIWGDC

Query:  NKVVQREILPSSTIFPCE-WIMDYLRTFSGSVGNQ
        NK+   ++L     +  E  ++  L T + SV N+
Subjt:  NKVVQREILPSSTIFPCE-WIMDYLRTFSGSVGNQ

MBA0583672.1 hypothetical protein [Gossypium raimondii]1.0e-0529.52Show/hide
Query:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGI--ISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV
        W++ +  +PT  +L+ +++ ++T+ PVC+   ES+ H+   C    + LEGI  +S+   ++ + +  RL V E +  SI+ F L  +  W++W + NK+
Subjt:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGI--ISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV

Query:  VQREI
           EI
Subjt:  VQREI

MBA0780198.1 hypothetical protein [Gossypium trilobum]5.9e-0630.3Show/hide
Query:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV
        +WR+ +++LPT   L+ R +D++T+ PVC+  +ES++H+ S C    + L G+         E         EF  LSI    +  +  W+IW + NK+
Subjt:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV

XP_012477574.1 PREDICTED: uncharacterized protein LOC105793194 [Gossypium raimondii]1.0e-0529.52Show/hide
Query:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGI--ISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV
        W++ +  +PT  +L+ +++ ++T+ PVC+   ES+ H+   C    + LEGI  +S+   ++ + +  RL V E +  SI+ F L  +  W++W + NK+
Subjt:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGI--ISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV

Query:  VQREI
           EI
Subjt:  VQREI

XP_030498005.1 uncharacterized protein LOC115713659 [Cannabis sativa]1.5e-0626.9Show/hide
Query:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNN--------RLWVNEFMVLSISNFGLACVGTWSIW
        WR FH+ LPT   L+ R+V   T  P+C    +S  H++  C        G    W +L     NN        ++ +    +LS S++ L  V TW IW
Subjt:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNN--------RLWVNEFMVLSISNFGLACVGTWSIW

Query:  GDCNKVVQ------REILPSSTIFPCEWIMDYLRTFSGSVGNQMD
        G+ N++V        +++ S+ + P  W+   L  +  +V   +D
Subjt:  GDCNKVVQ------REILPSSTIFPCEWIMDYLRTFSGSVGNQMD

TrEMBL top hitse value%identityAlignment
A0A5B6VZV7 Reverse transcriptase2.8e-0629.63Show/hide
Query:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLW----VNEFMVLSISNFGLACVGTWSIWGDC
        +W++ HNFLPT   L  RQ+  STI PVC+   E++ H+   C    + L+GI  A    + E      W    V EF + +     +  +  W IW + 
Subjt:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLW----VNEFMVLSISNFGLACVGTWSIWGDC

Query:  NKVVQREILPSSTIFPCE-WIMDYLRTFSGSVGNQ
        NK+   ++L     +  E  ++  L T + SV N+
Subjt:  NKVVQREILPSSTIFPCE-WIMDYLRTFSGSVGNQ

A0A6L2LQ64 RNA-directed DNA polymerase, eukaryota6.3e-0628.07Show/hide
Query:  MWRMFHNFLPTGTILRGRQVDI-STIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLWVNEFMVLSISNF--GLACVGTWSIWGDCN
        +WR   +FLP+   L  R + + S+  P+C   +E++ H++  CGL  + +   I  W +L+++   +    N  +   + +   G+ CV  WSIWG  N
Subjt:  MWRMFHNFLPTGTILRGRQVDI-STIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLWVNEFMVLSISNF--GLACVGTWSIWGDCN

Query:  KVVQREILPSSTIF
        + +  E+ PS ++F
Subjt:  KVVQREILPSSTIF

A0A7J8P414 zf-RVT domain-containing protein (Fragment)4.8e-0629.52Show/hide
Query:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGI--ISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV
        W++ +  +PT  +L+ +++ ++T+ PVC+   ES+ H+   C    + LEGI  +S+   ++ + +  RL V E +  SI+ F L  +  W++W + NK+
Subjt:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGI--ISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV

Query:  VQREI
           EI
Subjt:  VQREI

A0A7J9F4U8 Uncharacterized protein (Fragment)2.8e-0630.3Show/hide
Query:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV
        +WR+ +++LPT   L+ R +D++T+ PVC+  +ES++H+ S C    + L G+         E         EF  LSI    +  +  W+IW + NK+
Subjt:  MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKV

A0A803PDX1 Uncharacterized protein7.5e-0726.9Show/hide
Query:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNN--------RLWVNEFMVLSISNFGLACVGTWSIW
        WR FH+ LPT   L+ R+V   T  P+C    +S  H++  C        G    W +L     NN        ++ +    +LS S++ L  V TW IW
Subjt:  WRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNN--------RLWVNEFMVLSISNFGLACVGTWSIW

Query:  GDCNKVVQ------REILPSSTIFPCEWIMDYLRTFSGSVGNQMD
        G+ N++V        +++ S+ + P  W+   L  +  +V   +D
Subjt:  GDCNKVVQ------REILPSSTIFPCEWIMDYLRTFSGSVGNQMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGGATGTTCCACAATTTCCTTCCGACTGGTACTATTCTCCGGGGTCGCCAGGTGGACATTTCTACTATCTATCCTGTTTGTAGGGAGTGTGATGAGTCTATGGA
GCATATTATTTCCTATTGTGGCTTGGGCTACAAAGGTTTGGAAGGAATTATCTCGGCTTGGCATCAGTTGGAGTTCGAAAAATTCAACAACCGGCTGTGGGTTAATGAGT
TTATGGTCTTATCTATATCTAATTTTGGCCTGGCATGTGTGGGGACTTGGTCCATCTGGGGTGATTGTAACAAGGTTGTCCAGCGTGAAATTCTCCCTTCGAGTACTATT
TTCCCTTGTGAATGGATTATGGATTATCTGAGAACATTCTCTGGCTCGGTGGGTAATCAAATGGATGGAAGTCTGGGGGCTTCTTTTTTGAGCCCTGTTTGTGGACGCCT
CGTGCAAGGAAGGAGTGGAGGTGGTCAAGTTTTGGTATCGTCCTCTTGGATGATTCTGCGATGGTTAAAGAGGCATCATATGGTTTCCTTGATCTACTTTTATCTCCTCT
GTGTGTATTATTGTAAATATCCTTGCCATATTGTCTCTTACTGTCTTTTAACCTCCTCCTACTTAGGTTACCTTTGTACACTTGTGGGCGGCCAGCATCCCCATAATCAT
AAAGATGGCACAGCAAGCAGGGGTCAAACGTTGGTGATGGTTGAGGAGGAAGGCTTGGTGCTAAAGTTTCAGGAAGTAGGTTTACTAAATATAGATAGTATGACCTTGTA
TTCAATAATCTCCCTAGAAATGTGGAGAACTTTGAGAGAAAAGGAAAAACTTGGTGGATCCTACCGTTGGCCGACTGTAGTCTCAAGGAGCTTGGCCATAAGTAGCCTGA
CTAGGGGCACA
mRNA sequenceShow/hide mRNA sequence
CTCGAGGCTTTCTTTGAGTTCTGTTGACTGGTCTAGTCGGTGGAAGCGTCTTTGAAGTGCAAAAATTCCAGCGGAGGTTAAACATTTTATGTGGAGGATGTTCCACAATT
TCCTTCCGACTGGTACTATTCTCCGGGGTCGCCAGGTGGACATTTCTACTATCTATCCTGTTTGTAGGGAGTGTGATGAGTCTATGGAGCATATTATTTCCTATTGTGGC
TTGGGCTACAAAGGTTTGGAAGGAATTATCTCGGCTTGGCATCAGTTGGAGTTCGAAAAATTCAACAACCGGCTGTGGGTTAATGAGTTTATGGTCTTATCTATATCTAA
TTTTGGCCTGGCATGTGTGGGGACTTGGTCCATCTGGGGTGATTGTAACAAGGTTGTCCAGCGTGAAATTCTCCCTTCGAGTACTATTTTCCCTTGTGAATGGATTATGG
ATTATCTGAGAACATTCTCTGGCTCGGTGGGTAATCAAATGGATGGAAGTCTGGGGGCTTCTTTTTTGAGCCCTGTTTGTGGACGCCTCGTGCAAGGAAGGAGTGGAGGT
GGTCAAGTTTTGGTATCGTCCTCTTGGATGATTCTGCGATGGTTAAAGAGGCATCATATGGTTTCCTTGATCTACTTTTATCTCCTCTGTGTGTATTATTGTAAATATCC
TTGCCATATTGTCTCTTACTGTCTTTTAACCTCCTCCTACTTAGGTTACCTTTGTACACTTGTGGGCGGCCAGCATCCCCATAATCATAAAGATGGCACAGCAAGCAGGG
GTCAAACGTTGGTGATGGTTGAGGAGGAAGGCTTGGTGCTAAAGTTTCAGGAAGTAGGTTTACTAAATATAGATAGTATGACCTTGTATTCAATAATCTCCCTAGAAATG
TGGAGAACTTTGAGAGAAAAGGAAAAACTTGGTGGATCCTACCGTTGGCCGACTGTAGTCTCAAGGAGCTTGGCCATAAGTAGCCTGACTAGGGGCACA
Protein sequenceShow/hide protein sequence
MWRMFHNFLPTGTILRGRQVDISTIYPVCRECDESMEHIISYCGLGYKGLEGIISAWHQLEFEKFNNRLWVNEFMVLSISNFGLACVGTWSIWGDCNKVVQREILPSSTI
FPCEWIMDYLRTFSGSVGNQMDGSLGASFLSPVCGRLVQGRSGGGQVLVSSSWMILRWLKRHHMVSLIYFYLLCVYYCKYPCHIVSYCLLTSSYLGYLCTLVGGQHPHNH
KDGTASRGQTLVMVEEEGLVLKFQEVGLLNIDSMTLYSIISLEMWRTLREKEKLGGSYRWPTVVSRSLAISSLTRGT