; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC11G218470 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G218470
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationCiama_Chr11:32158011..32159669
RNA-Seq ExpressionCaUC11G218470
SyntenyCaUC11G218470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]6.1e-0532.05Show/hide
Query:  KLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSSTKLLPSATL
        KL+LELGTSA VRD  V  A+LS P+VFWRRR LE                            TRV +P+ K GSG R LA +                 
Subjt:  KLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSSTKLLPSATL

Query:  GTQLAKGLGGEVRTVTSSMASEANLEGKSVPGKEIGSVMEAKRKKAETKEFSEDKE
                        +S+   A  EG    GKE+ +V++A   K E++   EDK+
Subjt:  GTQLAKGLGGEVRTVTSSMASEANLEGKSVPGKEIGSVMEAKRKKAETKEFSEDKE

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]5.9e-2453.49Show/hide
Query:  GKLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSS------TK
        GKL+L+ GTSA VRD  V  A  +  MVFW+RR LE+AIIFFQVLEN +GRFA+LSLESFK R+TR+F+PE  +GSGWR LAG++S LLP S      T 
Subjt:  GKLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSS------TK

Query:  LLPSATLGTQLAKGLGGEVRTVTSSMASE
         +       +  KGLG  VR  T     +
Subjt:  LLPSATLGTQLAKGLGGEVRTVTSSMASE

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein7.5e-1755.17Show/hide
Query:  LDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLL
        ++L+ GTSA VRD     A  + P VFW RR L++AIIFFQVLEN+RGRF +LSLESFKG++TR+F+ +  KG G +  A ++S LL
Subjt:  LDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLL

A0A0A0KWZ9 Uncharacterized protein8.1e-1177.78Show/hide
Query:  NSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPS
        NSRGRFALLSLESFKGR+ R+F+PE  +GSGWR+LAG+VSG+LPS
Subjt:  NSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPS

A0A0A0LY03 Uncharacterized protein7.1e-1551.14Show/hide
Query:  QEVGKLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKV
        ++ GKLDL+LGT   V D     AD S  M  W+R++L++ IIFFQVLEN   RF ++SL+SFKGR+ RVF+ E  + SGWR LA ++
Subjt:  QEVGKLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKV

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X23.0e-0532.05Show/hide
Query:  KLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSSTKLLPSATL
        KL+LELGTSA VRD  V  A+LS P+VFWRRR LE                            TRV +P+ K GSG R LA +                 
Subjt:  KLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSSTKLLPSATL

Query:  GTQLAKGLGGEVRTVTSSMASEANLEGKSVPGKEIGSVMEAKRKKAETKEFSEDKE
                        +S+   A  EG    GKE+ +V++A   K E++   EDK+
Subjt:  GTQLAKGLGGEVRTVTSSMASEANLEGKSVPGKEIGSVMEAKRKKAETKEFSEDKE

A0A5D3CQQ0 Uncharacterized protein2.9e-2453.49Show/hide
Query:  GKLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSS------TK
        GKL+L+ GTSA VRD  V  A  +  MVFW+RR LE+AIIFFQVLEN +GRFA+LSLESFK R+TR+F+PE  +GSGWR LAG++S LLP S      T 
Subjt:  GKLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSS------TK

Query:  LLPSATLGTQLAKGLGGEVRTVTSSMASE
         +       +  KGLG  VR  T     +
Subjt:  LLPSATLGTQLAKGLGGEVRTVTSSMASE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCAAGAAGTTGGCAAGCTGGATTTGGAGTTGGGTACTTCGGCTAGGGTAAGAGACTATTCAGTGGTCGTTGCAGATCTGAGTAAGCCAATGGTTTTTTGGCGGAG
AAGGCAGTTGGAGTATGCGATTATTTTCTTTCAAGTGCTTGAAAACTCTAGGGGAAGATTTGCACTATTGTCTCTCGAATCATTCAAGGGGCGAAGGACAAGGGTCTTTG
TTCCTGAAGTCAAGAAAGGAAGTGGATGGAGATTATTGGCAGGGAAGGTTTCTGGGCTTCTTCCATCCTCTACGAAGCTTCTTCCGTCTGCAACTTTAGGAACACAATTG
GCAAAAGGCTTGGGAGGGGAAGTTAGAACAGTCACCTCGAGTATGGCTTCTGAGGCAAACTTGGAAGGGAAGTCGGTGCCAGGGAAGGAAATAGGCTCTGTGATGGAGGC
GAAAAGGAAAAAGGCAGAGACGAAAGAGTTCTCAGAAGATAAAGAAGTGGGAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCAAGAAGTTGGCAAGCTGGATTTGGAGTTGGGTACTTCGGCTAGGGTAAGAGACTATTCAGTGGTCGTTGCAGATCTGAGTAAGCCAATGGTTTTTTGGCGGAG
AAGGCAGTTGGAGTATGCGATTATTTTCTTTCAAGTGCTTGAAAACTCTAGGGGAAGATTTGCACTATTGTCTCTCGAATCATTCAAGGGGCGAAGGACAAGGGTCTTTG
TTCCTGAAGTCAAGAAAGGAAGTGGATGGAGATTATTGGCAGGGAAGGTTTCTGGGCTTCTTCCATCCTCTACGAAGCTTCTTCCGTCTGCAACTTTAGGAACACAATTG
GCAAAAGGCTTGGGAGGGGAAGTTAGAACAGTCACCTCGAGTATGGCTTCTGAGGCAAACTTGGAAGGGAAGTCGGTGCCAGGGAAGGAAATAGGCTCTGTGATGGAGGC
GAAAAGGAAAAAGGCAGAGACGAAAGAGTTCTCAGAAGATAAAGAAGTGGGAGATTGA
Protein sequenceShow/hide protein sequence
MLQEVGKLDLELGTSARVRDYSVVVADLSKPMVFWRRRQLEYAIIFFQVLENSRGRFALLSLESFKGRRTRVFVPEVKKGSGWRLLAGKVSGLLPSSTKLLPSATLGTQL
AKGLGGEVRTVTSSMASEANLEGKSVPGKEIGSVMEAKRKKAETKEFSEDKEVGD