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CaUC11G218480 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC11G218480
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionWD repeat-containing protein RUP2-like
Genome locationCiama_Chr11:32199180..32199688
RNA-Seq ExpressionCaUC11G218480
SyntenyCaUC11G218480
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR044616 - WD repeat-containing protein RUP1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038490.1 WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]3.1e-1657.3Show/hide
Query:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        TRC+ G   A V  +      VV S +CCVEFNPY G LVAVGCA++KAYG D+ KM E +VV EGH KTV YVKF+D  T+ S ST G
Subjt:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

KAE8651477.1 hypothetical protein Csa_002658 [Cucumis sativus]9.0e-1656.18Show/hide
Query:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        TRC+ G   A V  +      VV S +CCVEFNP+ G LVAVGCA++KAYG D+ KM E +VV EGH KTV YVKF+D  T+ S ST G
Subjt:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

XP_004148378.3 LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus]9.0e-1656.18Show/hide
Query:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        TRC+ G   A V  +      VV S +CCVEFNP+ G LVAVGCA++KAYG D+ KM E +VV EGH KTV YVKF+D  T+ S ST G
Subjt:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

XP_022952662.1 WD repeat-containing protein RUP2-like [Cucurbita moschata]9.0e-1666.18Show/hide
Query:  VVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        VV S +CCVEFNPY G LV VGCA++KAYG D+ KM EA++V EGHAKTV YVKF+D  T+ S ST G
Subjt:  VVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

XP_038887335.1 WD repeat-containing protein RUP2-like [Benincasa hispida]5.3e-1657.3Show/hide
Query:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        TRC  G   A V  +      VV S +CCVEFNPY G LVAVGCA++KAYG D+ KM E +VV EGH KTV YVKF+D  T+ S ST G
Subjt:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

TrEMBL top hitse value%identityAlignment
A0A0A0LHK2 Ubiquitin ligase protein cop14.4e-1656.18Show/hide
Query:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        TRC+ G   A V  +      VV S +CCVEFNP+ G LVAVGCA++KAYG D+ KM E +VV EGH KTV YVKF+D  T+ S ST G
Subjt:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

A0A5A7T553 WD repeat-containing protein RUP2-like1.5e-1657.3Show/hide
Query:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        TRC+ G   A V  +      VV S +CCVEFNPY G LVAVGCA++KAYG D+ KM E +VV EGH KTV YVKF+D  T+ S ST G
Subjt:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

A0A6J1GKZ5 WD repeat-containing protein RUP2-like4.4e-1666.18Show/hide
Query:  VVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        VV S +CCVEFNPY G LV VGCA++KAYG D+ KM EA++V EGHAKTV YVKF+D  T+ S ST G
Subjt:  VVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

A0A6J1I327 WD repeat-containing protein RUP2-like9.7e-1664.71Show/hide
Query:  VVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        +V S +CCVEFNPY G LV VGCA++KAYG D+ KM EA++V EGHAKTV YVKF+D  T+ S ST G
Subjt:  VVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

A0A7J6E5H2 WD_REPEATS_REGION domain-containing protein1.1e-1449.44Show/hide
Query:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        TRC+ G   ATV  +   C+      +CCVEFNP+ G LVAVGCA+++AYG D  K+ + ++V +GH KTV YV+F+D RTM S  T G
Subjt:  TRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

SwissProt top hitse value%identityAlignment
P93471 E3 ubiquitin-protein ligase COP15.2e-0638.1Show/hide
Query:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST
        + +CCV++NP  G  +AVG A+   +  D   +   + V  GH K V YVKF+    +AS ST
Subjt:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST

Q9FFA7 WD repeat-containing protein RUP24.5e-1046.15Show/hide
Query:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        S +CCVEF+P  G  VAVGCA++K Y  D  K+ +  +  +GH KTV YV+F+D  T+ +  T G
Subjt:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

Q9LJR3 Protein SPA1-RELATED 31.5e-0539.68Show/hide
Query:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST
        + +CCV+F    G+ +A G A+ K Y  D       +    GH+KTV YVKF+D  T+ S+ST
Subjt:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST

Q9LTJ6 WD repeat-containing protein RUP14.5e-1044.44Show/hide
Query:  LCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        +C VEF+P+ G  +AVGCA++ AY  D  ++ + ++V +GH KTV Y +FMD  T+ + ST G
Subjt:  LCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

Q9SYX2 Protein SUPPRESSOR OF PHYA-105 13.9e-0637.66Show/hide
Query:  TVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST
        ++GT W        + +CCV+F+ Y   L+A G A+ K Y  D   +        GH K V YVKFMD  T+ S ST
Subjt:  TVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST

Arabidopsis top hitse value%identityAlignment
AT1G53090.1 SPA1-related 44.1e-0638.1Show/hide
Query:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST
        + +CCV+F    G+ +A G A+ K Y  D       +    GH KTV YV+F+D  T+ S+ST
Subjt:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST

AT2G46340.1 SPA (suppressor of phyA-105) protein family2.8e-0737.66Show/hide
Query:  TVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST
        ++GT W        + +CCV+F+ Y   L+A G A+ K Y  D   +        GH K V YVKFMD  T+ S ST
Subjt:  TVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST

AT3G15354.1 SPA1-related 31.1e-0639.68Show/hide
Query:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST
        + +CCV+F    G+ +A G A+ K Y  D       +    GH+KTV YVKF+D  T+ S+ST
Subjt:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTST

AT5G23730.1 Transducin/WD40 repeat-like superfamily protein3.2e-1146.15Show/hide
Query:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        S +CCVEF+P  G  VAVGCA++K Y  D  K+ +  +  +GH KTV YV+F+D  T+ +  T G
Subjt:  SQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG

AT5G52250.1 Transducin/WD40 repeat-like superfamily protein3.2e-1144.44Show/hide
Query:  LCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG
        +C VEF+P+ G  +AVGCA++ AY  D  ++ + ++V +GH KTV Y +FMD  T+ + ST G
Subjt:  LCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCACCGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCGGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTTGTGT
GGAATTCAACCCGTACGACGGCAAGTTGGTGGCAGTTGGATGCGCGAATCAGAAAGCATACGGGGACGACCAGTACAAAATGGGGGAAGCAATTGTGGTATCCGAAGGGC
ACGCGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGCGTCAACGAGTACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAA
AAAATTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCACCGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCGGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTTGTGT
GGAATTCAACCCGTACGACGGCAAGTTGGTGGCAGTTGGATGCGCGAATCAGAAAGCATACGGGGACGACCAGTACAAAATGGGGGAAGCAATTGTGGTATCCGAAGGGC
ACGCGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGCGTCAACGAGTACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAA
AAAATTTGTTGA
Protein sequenceShow/hide protein sequence
MGTGQKTTRCKYGTHAATVGTAWRWCSQVVLSQLCCVEFNPYDGKLVAVGCANQKAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMASTSTKGGTIVSTRRKRKMVE
KIC