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Carg00020 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00020
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCytochrome c oxidase copper chaperone
Genome locationCarg_Chr04:4918279..4922362
RNA-Seq ExpressionCarg00020
SyntenyCarg00020
Gene Ontology termsGO:0005758 - mitochondrial intermembrane space (cellular component)
GO:0005507 - copper ion binding (molecular function)
GO:0016531 - copper chaperone activity (molecular function)
InterPro domainsIPR007745 - Cytochrome c oxidase copper chaperone
IPR009069 - Cysteine alpha-hairpin motif superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060636.1 cytochrome c oxidase copper chaperone 2-like [Cucumis melo var. makuwa]7.4e-2477.92Show/hide
Query:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        MGGLPV NSS      ESKL+Q S VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE CGKWIEAH   L   G
Subjt:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

KAG6600726.1 Cytochrome c oxidase copper chaperone 1, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4593.88Show/hide
Query:  DLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        DLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAH   L   G
Subjt:  DLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

KAG7031366.1 Cytochrome c oxidase copper chaperone 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-81100Show/hide
Query:  MRARQMKEVVEQSGMSVTDLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEF
        MRARQMKEVVEQSGMSVTDLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEF
Subjt:  MRARQMKEVVEQSGMSVTDLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEF

Query:  CGKWIEAHLAVLATAGVAAALVIVLGRWDVHVYGVKVAAEPRDSLLDARAMALALARSG
        CGKWIEAHLAVLATAGVAAALVIVLGRWDVHVYGVKVAAEPRDSLLDARAMALALARSG
Subjt:  CGKWIEAHLAVLATAGVAAALVIVLGRWDVHVYGVKVAAEPRDSLLDARAMALALARSG

KGN56261.2 hypothetical protein Csa_011168 [Cucumis sativus]4.3e-3275.79Show/hide
Query:  FQDFIAFSFRLHSLRNCDMGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        FQDF+ F  RLHSLRNC MGGLPV NSS      ESKL+Q S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE CGKWIEAH   L   G
Subjt:  FQDFIAFSFRLHSLRNCDMGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

XP_022943031.1 cytochrome c oxidase copper chaperone 2-like [Cucurbita moschata]7.7e-2990.14Show/hide
Query:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        MGGLPVGNSSESKLEQGS VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAH   L   G
Subjt:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

TrEMBL top hitse value%identityAlignment
A0A0A0L5D1 Cytochrome c oxidase copper chaperone4.7e-2476.62Show/hide
Query:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        MGGLPV NSS      ESKL+Q S V+KSTPDGKPKKKICCACPDTKKLRDECIVEHGEE CGKWIEAH   L   G
Subjt:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

A0A5D3BSU0 Cytochrome c oxidase copper chaperone 2-like3.6e-2477.92Show/hide
Query:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        MGGLPV NSS      ESKL+Q S VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEE CGKWIEAH   L   G
Subjt:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

A0A6J1CNF2 cytochrome c oxidase copper chaperone 1-like1.0e-2375.32Show/hide
Query:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        MGGLPVGN S      ESKL+QGS VVKST DGKPKK+ICCACP+TKKLRDECIVEHGEE CGKWIEAH   L   G
Subjt:  MGGLPVGNSS------ESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

A0A6J1FQL2 cytochrome c oxidase copper chaperone 2-like3.7e-2990.14Show/hide
Query:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        MGGLPVGNSSESKLEQGS VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAH   L   G
Subjt:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

A0A6J1IMZ6 cytochrome c oxidase copper chaperone 23.7e-2990.14Show/hide
Query:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        MGGLPVGNSSESKLEQGS VVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAH   L   G
Subjt:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

SwissProt top hitse value%identityAlignment
P81045 Cytochrome c oxidase copper chaperone4.5e-0848.21Show/hide
Query:  SVVVKSTPDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        +  + + P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH   +   G
Subjt:  SVVVKSTPDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

Q14061 Cytochrome c oxidase copper chaperone1.0e-0755.1Show/hide
Query:  PDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        P+ + KK  K CCACP+TKK RD CI+E GEE CG  IEAH   +   G
Subjt:  PDGKPKK--KICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

Q54ID0 Cytochrome c oxidase copper chaperone7.0e-0957.14Show/hide
Query:  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        +T    PKKK+CCACP+TKK+RDECIV +GEE C   IE H   L   G
Subjt:  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

Q94FT1 Cytochrome c oxidase copper chaperone 23.8e-1560.56Show/hide
Query:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        M GL   +S+ S L++ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH+  L + G
Subjt:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

Q9LJQ9 Cytochrome c oxidase copper chaperone 17.2e-1469.39Show/hide
Query:  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        ++ + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH   L   G
Subjt:  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

Arabidopsis top hitse value%identityAlignment
AT1G53030.1 Cytochrome C oxidase copper chaperone (COX17)2.7e-1660.56Show/hide
Query:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        M GL   +S+ S L++ S  V +T + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH+  L + G
Subjt:  MGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG

AT3G15352.1 cytochrome c oxidase 175.1e-1569.39Show/hide
Query:  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG
        ++ + KPKK+ICCACPDTKKLRDECIVEHGE  C KWIEAH   L   G
Subjt:  STPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLAVLATAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCAAGGCAGATGAAGGAGGTGGTGGAGCAGAGTGGGATGTCAGTCACTGATCTTCGGCGTGCGAGGGTCGAAAGCTTTCAGGATTTCATTGCCTTTTCCTTTAG
ACTGCATTCCTTGAGAAATTGTGACATGGGTGGGCTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGTAGTGGTCAAGTCTACCCCAGATGGAAAAC
CAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCTGGCA
GTCCTTGCAACTGCAGGGGTTGCAGCTGCACTTGTCATTGTGCTCGGCCGCTGGGACGTCCATGTCTATGGCGTCAAAGTAGCTGCAGAACCAAGAGATTCATTGTTAGA
TGCCAGGGCCATGGCGTTGGCATTGGCAAGGAGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCAAGGCAGATGAAGGAGGTGGTGGAGCAGAGTGGGATGTCAGTCACTGATCTTCGGCGTGCGAGGGTCGAAAGCTTTCAGGATTTCATTGCCTTTTCCTTTAG
ACTGCATTCCTTGAGAAATTGTGACATGGGTGGGCTACCTGTTGGAAATTCTTCGGAGTCCAAACTTGAGCAGGGATCAGTAGTGGTCAAGTCTACCCCAGATGGAAAAC
CAAAAAAGAAGATTTGTTGTGCCTGTCCTGATACTAAGAAGCTAAGAGATGAGTGCATTGTAGAACATGGTGAAGAATTCTGTGGTAAATGGATTGAGGCTCATCTGGCA
GTCCTTGCAACTGCAGGGGTTGCAGCTGCACTTGTCATTGTGCTCGGCCGCTGGGACGTCCATGTCTATGGCGTCAAAGTAGCTGCAGAACCAAGAGATTCATTGTTAGA
TGCCAGGGCCATGGCGTTGGCATTGGCAAGGAGTGGCTGA
Protein sequenceShow/hide protein sequence
MRARQMKEVVEQSGMSVTDLRRARVESFQDFIAFSFRLHSLRNCDMGGLPVGNSSESKLEQGSVVVKSTPDGKPKKKICCACPDTKKLRDECIVEHGEEFCGKWIEAHLA
VLATAGVAAALVIVLGRWDVHVYGVKVAAEPRDSLLDARAMALALARSG