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Carg00038 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00038
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncalmodulin-like
Genome locationCarg_Chr04:4976299..4976571
RNA-Seq ExpressionCarg00038
SyntenyCarg00038
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591370.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]3.7e-2873.86Show/hide
Query:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYT
        M RK+K Y  RPK+SR+QL VIFRNHD DGDGRLS+ ELT AF YIGA LPS+RA HALL+TDSD DGFI EKDFE L++YAEKR+YT
Subjt:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYT

KAG6600743.1 Calcium-binding protein CML38, partial [Cucurbita argyrosperma subsp. sororia]1.8e-43100Show/hide
Query:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
        MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
Subjt:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI

KAG6600744.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3991.11Show/hide
Query:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
        MPRKTK YH RP+ISR+QLR+IFRNHD +GDGRLSSAELT+AFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
Subjt:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI

KAG6608481.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]9.7e-2972.22Show/hide
Query:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
        M RK KM   RPK+SR+QL VIFRNHD DGDGRLS+ ELT+AF YIGA LPS+RA HAL YTDSDRDGFI EKDFE L++Y EKR YT++
Subjt:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI

KAG7024248.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2974.44Show/hide
Query:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
        M RK+K Y  RPK+SR+QL VIFRNHD DGDGRLS+ ELT AF YIGA LPS+RA HALL+TDSD DGFI EKDFE L++YAEKR+YTVI
Subjt:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI

TrEMBL top hitse value%identityAlignment
A0A0A0KZR6 Uncharacterized protein2.6e-2768.89Show/hide
Query:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
        M RK+K Y+ R K+SR+QL +IFRNHD D DGRLS+ ELT+AF YIGA LP++RA HALL+ DSDRDGFI EKDFE L++YAE+RQYT+I
Subjt:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI

A0A5A7UYC0 Putative calcium-binding protein CML104.7e-1345.33Show/hide
Query:  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQY
        ++SR+ ++ IFR HD DGDGRLS +E+ KAF + G++LP ++A + + + D + DG+I+E++ ++L+DYAEK Q+
Subjt:  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQY

A0A5A7VDB9 Putative calcium-binding protein CML279.8e-2767.78Show/hide
Query:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
        M R++K YH R ++SR+QL +IFRNHD D DGRLS+ ELT+AF YIGA LP +RA HAL + DSDRDGFI EKDFE L++YAE+RQYTVI
Subjt:  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI

A0A6J1GK16 calmodulin-like1.6e-1351.39Show/hide
Query:  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEK
        K+SR Q++ IF  HD DGDG LS +ELTKAF + G+++P ++A + L Y D+D DG I E++ E+L+DYAE+
Subjt:  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEK

A0A6J1KUW2 calmodulin-like1.6e-1351.39Show/hide
Query:  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEK
        K+SR Q++ IF  HD DGDG LS +ELTKAF + G+++P ++A + L Y D+D DG I E++ E+L+DYAE+
Subjt:  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEK

SwissProt top hitse value%identityAlignment
Q0DJV6 Probable calcium-binding protein CML181.0e-0437.93Show/hide
Query:  QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDF
        +L  +FR +D +GDG++S+ EL      +GA L        +   DSDRDGF+D  +F
Subjt:  QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDF

Q39419 Polcalcin Bet v 42.9e-0435.82Show/hide
Query:  HQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDF
        H + K  R++   IF+  D +GDG++S+AEL +A   +G++ P     H +   D+D DGFI  ++F
Subjt:  HQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDF

Q6L4D4 Probable calcium-binding protein CML152.9e-0433.85Show/hide
Query:  RPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDF
        RP  +  +   +FR  D +GDGR+S AEL   F  +G  +        +   DSD DG+I   +F
Subjt:  RPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDF

Q8L3R2 Probable calcium-binding protein CML412.9e-0435.38Show/hide
Query:  SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLI
        S+++LR +F + D DGDG++S+ EL   F  +G  +    A  A+   D+D DG +  +DF  L+
Subjt:  SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLI

Q9SRE6 Calcium-binding protein CML387.7e-0534.29Show/hide
Query:  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQ
        ++L  +F   D + DGR+S  EL K+F  +G  L    A  A+  +D+D DG +D ++F QLI   ++ +
Subjt:  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQ

Arabidopsis top hitse value%identityAlignment
AT1G76650.1 calmodulin-like 385.5e-0634.29Show/hide
Query:  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQ
        ++L  +F   D + DGR+S  EL K+F  +G  L    A  A+  +D+D DG +D ++F QLI   ++ +
Subjt:  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQ

AT1G76650.3 calmodulin-like 385.5e-0634.29Show/hide
Query:  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQ
        ++L  +F   D + DGR+S  EL K+F  +G  L    A  A+  +D+D DG +D ++F QLI   ++ +
Subjt:  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQ

AT3G03000.1 EF hand calcium-binding protein family2.7e-0538.46Show/hide
Query:  QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYA
        QL+ IFR  DRDG+G +++AEL  +   +G  L +      +   D D DG ID ++F Q I  A
Subjt:  QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYA

AT3G50770.1 calmodulin-like 412.1e-0535.38Show/hide
Query:  SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLI
        S+++LR +F + D DGDG++S+ EL   F  +G  +    A  A+   D+D DG +  +DF  L+
Subjt:  SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLI

AT4G03290.1 EF hand calcium-binding protein family6.1e-0529.51Show/hide
Query:  QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQL
        +L  +F+  D+DGDG++++ EL ++F  +G ++P       +   D + DG +D ++F +L
Subjt:  QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGCAAAACCAAAATGTACCATCAGAGGCCCAAGATATCAAGACAGCAATTAAGGGTAATCTTCAGAAACCACGACCGAGATGGTGACGGCCGCCTGAGCTCCGC
CGAGCTGACCAAAGCCTTCCACTACATCGGTGCCCTTCTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTACACCGATTCTGACAGAGACGGATTCATCGATGAGAAGG
ATTTCGAACAGCTCATTGATTATGCCGAGAAACGCCAATACACCGTCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGCAAAACCAAAATGTACCATCAGAGGCCCAAGATATCAAGACAGCAATTAAGGGTAATCTTCAGAAACCACGACCGAGATGGTGACGGCCGCCTGAGCTCCGC
CGAGCTGACCAAAGCCTTCCACTACATCGGTGCCCTTCTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTACACCGATTCTGACAGAGACGGATTCATCGATGAGAAGG
ATTTCGAACAGCTCATTGATTATGCCGAGAAACGCCAATACACCGTCATTTAA
Protein sequenceShow/hide protein sequence
MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI