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Carg00056 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00056
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr04:5076154..5076760
RNA-Seq ExpressionCarg00056
SyntenyCarg00056
Gene Ontology termsGO:0010089 - xylem development (biological process)
InterPro domainsIPR039280 - VASCULAR-RELATED UNKNOWN PROTEIN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600765.1 hypothetical protein SDJN03_05998, partial [Cucurbita argyrosperma subsp. sororia]8.7e-7298.64Show/hide
Query:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKK--QQQQQQLSAMINQTKHK
        MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKK  QQQQQQLSAMINQTKHK
Subjt:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKK--QQQQQQLSAMINQTKHK

Query:  GKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
        GKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Subjt:  GKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

KAG7031402.1 hypothetical protein SDJN02_05442, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-73100Show/hide
Query:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGK
        MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGK
Subjt:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGK

Query:  EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
        EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Subjt:  EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

XP_011652737.2 uncharacterized protein LOC105435073 [Cucumis sativus]6.1e-3356.11Show/hide
Query:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFD-----HSKT---------ISYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI
        MENSA SRIC+ ++ D       ED S S +SSMDDLL+FD     HS +          S  +   A  S+S           DDDL+DTATSPPHPSI
Subjt:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFD-----HSKT---------ISYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI

Query:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF
        +S MD  SSKQ+K+Q+     AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Subjt:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF

XP_022941575.1 uncharacterized protein LOC111446888 [Cucurbita moschata]1.1e-7197.93Show/hide
Query:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGK
        MENSAISRICTQKQVD+DHSSWTSSMDDLLLFDHSKTISYH QNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQ QQQQLSAMINQTKHKGK
Subjt:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGK

Query:  EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
        EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Subjt:  EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

XP_022989755.1 uncharacterized protein LOC111486825 [Cucurbita maxima]2.5e-6693.15Show/hide
Query:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSS-DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKG
        MENSAIS+ICTQKQVD+DHSSWTSSMDDLLLFD+SKT SYH QNAAVFSSS DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQ  +AMINQTKH+G
Subjt:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSS-DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKG

Query:  KEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
        KEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Subjt:  KEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

TrEMBL top hitse value%identityAlignment
A0A0A0L2F7 Uncharacterized protein3.0e-3356.11Show/hide
Query:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFD-----HSKT---------ISYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI
        MENSA SRIC+ ++ D       ED S S +SSMDDLL+FD     HS +          S  +   A  S+S           DDDL+DTATSPPHPSI
Subjt:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFD-----HSKT---------ISYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI

Query:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF
        +S MD  SSKQ+K+Q+     AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Subjt:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF

A0A1S3CKU1 uncharacterized protein LOC1035016015.6e-3255.56Show/hide
Query:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFDHSKTI--------------SYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI
        MENSA SRIC+  + D       ED S S +SSMDDLL+FD   TI              S  +   A  S+S           DDDL+DTATSPPHPSI
Subjt:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFDHSKTI--------------SYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI

Query:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF
        +S MD  SSKQ+K+Q+     A INQTKHKGK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Subjt:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF

A0A5D3BKS2 Putative CTD small phosphatase-like protein 25.6e-3255.56Show/hide
Query:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFDHSKTI--------------SYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI
        MENSA SRIC+  + D       ED S S +SSMDDLL+FD   TI              S  +   A  S+S           DDDL+DTATSPPHPSI
Subjt:  MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFDHSKTI--------------SYHIQNAAVFSSSD----------DDDLQDTATSPPHPSI

Query:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF
        +S MD  SSKQ+K+Q+     A INQTKHKGK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Subjt:  ISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF

A0A6J1FU25 uncharacterized protein LOC1114468885.5e-7297.93Show/hide
Query:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGK
        MENSAISRICTQKQVD+DHSSWTSSMDDLLLFDHSKTISYH QNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQ QQQQLSAMINQTKHKGK
Subjt:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGK

Query:  EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
        EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Subjt:  EIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

A0A6J1JN91 uncharacterized protein LOC1114868251.2e-6693.15Show/hide
Query:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSS-DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKG
        MENSAIS+ICTQKQVD+DHSSWTSSMDDLLLFD+SKT SYH QNAAVFSSS DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQ  +AMINQTKH+G
Subjt:  MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSS-DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKG

Query:  KEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
        KEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Subjt:  KEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACTCAGCCATATCCAGAATCTGCACCCAGAAGCAGGTGGATGAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAAC
AATTTCATATCACATTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATG
GGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGAT
AGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTTAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACTCAGCCATATCCAGAATCTGCACCCAGAAGCAGGTGGATGAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAAC
AATTTCATATCACATTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATG
GGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGAT
AGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTTAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG
Protein sequenceShow/hide protein sequence
MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQLSAMINQTKHKGKEIEEFGEVED
RIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG