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Carg00120 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg00120
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S17, chloroplastic
Genome locationCarg_Chr04:5444651..5445744
RNA-Seq ExpressionCarg00120
SyntenyCarg00120
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]3.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

XP_004137152.1 uncharacterized protein LOC101211400 [Cucumis sativus]3.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

XP_022943007.1 uncharacterized protein LOC111447872 [Cucurbita moschata]4.3e-49100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

XP_022989005.1 uncharacterized protein LOC111486195 [Cucurbita maxima]9.6e-4999.03Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

XP_038891417.1 30S ribosomal protein S17-like [Benincasa hispida]2.9e-4591.26Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRV+LDPSRPLSKHK WVVAEILRKARIY+PPS++NQ+VSDK K SAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        ST+
Subjt:  STT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic1.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic1.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic1.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1FRT9 30S ribosomal protein S17, chloroplastic2.1e-49100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic4.7e-4999.03Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A4XLS1 30S ribosomal protein S171.1e-1856.41Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR
        K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GD+V +  +RPLSK KRW V +IL +A+
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR

A7HM43 30S ribosomal protein S171.5e-2051.06Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKG
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK KRWVV  IL ++++ + P  E  +  + G
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKG

B1I1J7 30S ribosomal protein S172.3e-2165.33Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+HKRW VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARI

B9MKH2 30S ribosomal protein S171.1e-1857.69Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR
        K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GD+V +  +RPLSK KRW V +IL +A+
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKAR

Q8R7W3 30S ribosomal protein S173.7e-1959.46Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK KRW + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein1.4e-3470.87Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPSRPLSK+K W+VAEI++KARIY P +     VS     S+ 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAP

Query:  STT
        STT
Subjt:  STT

AT1G79850.1 ribosomal protein S179.4e-1042.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein1.2e-3379.52Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPSRPLSKHK W+V+EI++KARIY P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQP

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein7.0e-0539.44Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKRWVVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK  R+ V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKRWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCAC
TTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAA
mRNA sequenceShow/hide mRNA sequence
ACATTCTATTTTTTATTTAATTTTCTCTATAATTTTCATCGCCTTGGCACGTGCACCAGTCATCGGACATCATAACCAACGTATCTCACCTTTCTAAACCCTACCACCCA
CTGTACTCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAATCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGTTTTTTTTAGGGGTTTCAAT
CTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTA
CGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGG
TGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTG
ATTGAGACATTTGTTCGTTGTTTTATACTAAGCCAAACTTGTATTTTCTTTTTCTCTTTTTAATTTTTGGATTGTCTTATGAAATCATAATCACTTGAATACCTGATGAC
TATTTGTGTGATATTGTTGTTTAAACATTCTTTTGCCTCTATTTAGAGCACATTGCAGTTGATTACAAGAATA
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT