CuGenDBv2

Gene ID	Carg00122
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlororespiratory reduction 3, putative isoform 1
Genome location	Carg_Chr04:5458977..5459643
RNA-Seq Expression	Carg00122
Synteny	Carg00122
Gene Ontology terms	GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR038931 - Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600832.1 putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-79

86.81

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Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR
        MA F CISVTKNVA+ASLNPSDDSHSPPPKTNGAA+TIPI NPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPR                   DLEEDR
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR

Query:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
        KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
Subjt:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

KAG7031468.1 putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-97

100

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Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR
        MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR

Query:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
        KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
Subjt:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

XP_022942899.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita moschata]

4.2e-79

86.81

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Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR
        MA F CISVTKNVA+ASLNPSDDSHSPPPKTNGAA+TIPI NPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPR                   DLEEDR
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR

Query:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
        KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
Subjt:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

XP_022985001.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita maxima]

3.2e-79

86.49

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Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLR---RRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLE
        MA FFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIP+NNP+LR   RRLPKPRRPSVIEIERAIGAGRFRDADPR                   DLE
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLR---RRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLE

Query:  EDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
        EDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
Subjt:  EDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

XP_023511915.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita pepo subsp. pepo]

9.9e-81

88.46

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Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR
        MA FFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPI NPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPR                   DLEEDR
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR

Query:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
        KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
Subjt:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJA3 Uncharacterized protein

1.0e-62

73.77

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Query:  MARFFCISVTKNVALASLNPS--DDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEE
        MA  F IS TKNVA ASLNP     SHSPP KTN AA TIPINNPRLRR+L  P RPS+IEIERAIG GRFRDADPR                   +LEE
Subjt:  MARFFCISVTKNVALASLNPS--DDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEE

Query:  DRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL
        D+KAAFDMFLMSFTGKYE  LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASGVIKLPF+TPFL++LL
Subjt:  DRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL

A0A1S3CM65 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1

8.2e-65

74.59

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Query:  MARFFCISVTKNVALASLNPS----DDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDL
        MA  F IS+TKNVALASLNP+      SHSPP KTN AA+TIPI  PRLR +L  PRRPSVIEIERAIG GRFRDADPR                   DL
Subjt:  MARFFCISVTKNVALASLNPS----DDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDL

Query:  EEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL
        EED+KAAFDMFLMSFTGKYEG LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASGVIKLPFNTPFL++LL
Subjt:  EEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL

A0A6J1DQ49 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

1.3e-65

76.24

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Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR
        +A F CISVTKNVALASLN SDDSHSP PK NG A+TIPI N    RRLPKPRRPSVIEIERAIGAGRFRDADPR                   DLEEDR
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR

Query:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL
        K  FDMFL+SFT KYEG LMKKLRETGEWVT+QTETKFQASGK FLLFTFQW+LPIWA SLLVASGVIKLPF+TPFLD+LL
Subjt:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL

A0A6J1FSN9 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

2.0e-79

86.81

Show/hide

Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR
        MA F CISVTKNVA+ASLNPSDDSHSPPPKTNGAA+TIPI NPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPR                   DLEEDR
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDR

Query:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
        KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
Subjt:  KAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

A0A6J1J6W0 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

1.5e-79

86.49

Show/hide

Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLR---RRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLE
        MA FFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIP+NNP+LR   RRLPKPRRPSVIEIERAIGAGRFRDADPR                   DLE
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLR---RRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLE

Query:  EDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
        EDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT
Subjt:  EDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

SwissProt top hits

e value

%identity

Alignment

Q9ZVE7 Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

2.6e-23

36.08

Show/hide

Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGA---AETIPINNPRLRRRLPKP----------RRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNF
        ++  + I+      +ASL  ++DS SP P ++ +   + T P   P   R++ K            +PS+ +IERA G+G +RD++              
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGA---AETIPINNPRLRRRLPKP----------RRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNF

Query:  IVVKYEMDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL
                 E D    FD  L+    K+E  + KKLRE GE    +TE K ++SGK  L+FT QW+LPIW  SLLVA GVIKLPF+ PFLD L+
Subjt:  IVVKYEMDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL

Arabidopsis top hits

e value

%identity

Alignment

AT2G01590.1 chlororespiratory reduction 3

1.8e-24

36.08

Show/hide

Query:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGA---AETIPINNPRLRRRLPKP----------RRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNF
        ++  + I+      +ASL  ++DS SP P ++ +   + T P   P   R++ K            +PS+ +IERA G+G +RD++              
Subjt:  MARFFCISVTKNVALASLNPSDDSHSPPPKTNGA---AETIPINNPRLRRRLPKP----------RRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNF

Query:  IVVKYEMDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL
                 E D    FD  L+    K+E  + KKLRE GE    +TE K ++SGK  L+FT QW+LPIW  SLLVA GVIKLPF+ PFLD L+
Subjt:  IVVKYEMDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL

Sequences

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CDS sequence

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ATGGCTCGCTTCTTCTGCATTTCTGTGACCAAAAATGTGGCTCTCGCTTCACTCAATCCCAGCGACGACTCTCACTCCCCTCCTCCCAAAACCAATGGCGCCGCCGAAAC
TATTCCGATCAACAATCCACGGTTACGCCGGCGGCTTCCAAAACCTCGTCGGCCCTCCGTTATTGAAATCGAACGTGCTATCGGTGCCGGAAGGTTCAGAGACGCGGATC
CCAGGCAAGTCCGAGAGTTCTGTTTCGGTGTTCTGAACTTTATTGTAGTGAAATATGAGATGGATTTGGAAGAAGATAGGAAGGCTGCATTTGACATGTTTTTGATGAGT
TTTACGGGGAAATATGAAGGGGCACTCATGAAGAAGCTTCGCGAGACAGGAGAATGGGTAACTGATCAGACTGAAACCAAATTTCAAGCTTCAGGAAAATCCTTTCTGCT
GTTTACGTTTCAATGGGTTCTTCCAATTTGGGCATTCTCACTCCTTGTGGCTTCTGGGGTCATTAAGTTACCATTCAACACTCCATTTCTTGATCAACTTCTTACGTAA

mRNA sequence

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Protein sequence

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MARFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEIERAIGAGRFRDADPRQVREFCFGVLNFIVVKYEMDLEEDRKAAFDMFLMS
FTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT

Carg00122 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome